Browse Element(s) Details


OsAffx.5573.1.S1_at

Description tigr:9635.m03889
TID=OsAffx.5573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3903011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39000OsAffx.16622.1.S1_at2/117+23376944..23379350expressed protein
LOC_Os07g39000Os.27237.3.A1_x_at1/117+23376944..23379350expressed protein
LOC_Os07g39010Os.48332.1.A1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.11693.1.S1_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_x_at4/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.23259.1.S1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.2.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.9194.3.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39020Os.47325.1.S1_at11/117+23396515..23398959Subtilisin N-terminal Region family protein, expressed
LOC_Os07g39030OsAffx.5573.1.S1_at11/117+23399311..23400153hypothetical protein
LOC_Os07g39040OsAffx.28818.1.S1_at9/117+23404939..23406846hypothetical protein
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed
LOC_Os07g39080OsAffx.16624.1.S1_x_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39080OsAffx.16624.1.S1_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39090OsAffx.16625.1.S1_at11/117+23423711..23429192hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5573.1.S1_at--682--10091Chr07:23399987..23400011 (25 bp)
TAGGACTGACTGACCCTGAATGGAT
LOC_Os07g39030
OsAffx.5573.1.S1_at--880--5811Chr07:23399976..23400000 (25 bp)
GACCCTGAATGGATGTGTACCTCGA
LOC_Os07g39030
OsAffx.5573.1.S1_at--1066--7431Chr07:23399962..23399986 (25 bp)
GTGTACCTCGATGATTCTTCGGTTT
LOC_Os07g39030
OsAffx.5573.1.S1_at--217--6571Chr07:23399950..23399974 (25 bp)
GATTCTTCGGTTTCTTCTGTTCTGT
LOC_Os07g39030
OsAffx.5573.1.S1_at--1085--10751Chr07:23399498..23399942 (25 bp)
TTGATTTGCTTTTACAAGGGAAGAA
LOC_Os07g39030
OsAffx.5573.1.S1_at--886--3951Chr07:23399467..23399491 (25 bp)
CGGAGAATCCGCAGGCGAGACCGCA
LOC_Os07g39030
OsAffx.5573.1.S1_at--446--2611Chr07:23399440..23399464 (25 bp)
AACCCGAGCGCTGCTTCGGTTTGGG
LOC_Os07g39030
OsAffx.5573.1.S1_at--1131--9351Chr07:23399425..23399449 (25 bp)
TCGGTTTGGGCCGAAACGATTGAGC
LOC_Os07g39030
OsAffx.5573.1.S1_at--658--6591Chr07:23399408..23399432 (25 bp)
GATTGAGCGGCCACCGTTCAGCTGC
LOC_Os07g39030
OsAffx.5573.1.S1_at--1101--6211Chr07:23399350..23399374 (25 bp)
GAGGCCCAGCACACGCGTTCTGAAG
LOC_Os07g39030
OsAffx.5573.1.S1_at--966--5111Chr07:23399342..23399366 (25 bp)
GCACACGCGTTCTGAAGACTTCTCA
LOC_Os07g39030
Target Sequence 
TAGGACTGACTGACCCTGAATGGATGTGTACCTCGATGATTCTTCGGTTTCTTCTGTTCTGTTCTGTTCTTGATTTGCTT
TTACAAGGGAAGAACAGAATCGGAGAATCCGCAGGCGAGACCGCACCAACCCGAGCGCTGCTTCGGTTTGGGCCGAAACG
ATTGAGCGGCCACCGTTCAGCTGCGGCCTGCGGGCCTTCGGGCCACACGGCGAGGCCGAGGCCCAGCACACGCGTTCTGA
AGACTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis