Browse Element(s) Details


OsAffx.28818.1.S1_at

Description tigr:9635.m03890
TID=OsAffx.28818.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g390409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39010Os.48332.1.A1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.11693.1.S1_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_x_at4/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.23259.1.S1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.2.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.9194.3.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39020Os.47325.1.S1_at11/117+23396515..23398959Subtilisin N-terminal Region family protein, expressed
LOC_Os07g39030OsAffx.5573.1.S1_at11/117+23399311..23400153hypothetical protein
LOC_Os07g39040OsAffx.28818.1.S1_at9/117+23404939..23406846hypothetical protein
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed
LOC_Os07g39080OsAffx.16624.1.S1_x_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39080OsAffx.16624.1.S1_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39090OsAffx.16625.1.S1_at11/117+23423711..23429192hypothetical protein
LOC_Os07g39100OsAffx.16626.1.S1_at11/117+23430025..23430687hypothetical protein
LOC_Os07g39110Os.55217.1.S1_at11/117+23431681..23433157expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28818.1.S1_at--75--6671Chr07:23406664..23406688 (25 bp)
GTTGAAGGCGCACACATTGCATCTC
LOC_Os07g39040
OsAffx.28818.1.S1_at--579--2071Chr07:23406651..23406675 (25 bp)
ACATTGCATCTCGTCGACAACGGCG
LOC_Os07g39040
OsAffx.28818.1.S1_at--371--8291Chr07:23406567..23406591 (25 bp)
GGCTTCAACCTATTCAACGATCGTC
LOC_Os07g39040
OsAffx.28818.1.S1_at--574--2591Chr07:23406552..23406576 (25 bp)
AACGATCGTCTTACGAGTTTCTACT
LOC_Os07g39040
OsAffx.28818.1.S1_at--1039--6051Chr07:23406538..23406562 (25 bp)
GAGTTTCTACTACACGCACCGAGTA
LOC_Os07g39040
OsAffx.28818.1.S1_at--924--5071Chr07:23406523..23406547 (25 bp)
GCACCGAGTAGATCTGGACGCGAAG
LOC_Os07g39040
OsAffx.28818.1.S1_at--719--1651Chr07:18430301..18430334 (25 bp)
AGCGCTACGCGTCGGACATGACGAA
NONE
OsAffx.28818.1.S1_at--76--2111NONE
ACATGACGAAGCATTTTCCCCGAAG
NONE
OsAffx.28818.1.S1_at--213--4071Chr07:23405128..23405150 (23 bp)
CGAGGTACGTCTCATGCTTCAGCTG
LOC_Os07g39040
OsAffx.28818.1.S1_at--739--5211Chr07:23405098..23405122 (25 bp)
GAATTCATTCGTTTGTTCGCAGCGA
LOC_Os07g39040
OsAffx.28818.1.S1_at--881--6571Chr07:23405075..23405099 (25 bp)
GATTCTCTGTCATCGCCATGAAGAA
LOC_Os07g39040
Target Sequence 
GTTGAAGGCGCACACATTGCATCTCGTCGACAACGGCGGCGAGCTCATGCTCGTGCACCACTGCTTCGGGACGACGCGCC
GAGGTGCGGGCGGCGGCGGCTTCAACCTATTCAACGATCGTCTTACGAGTTTCTACTACACGCACCGAGTAGATCTGGAC
GCGAAGAGGAGGAGAGCGCTACGCGTCGGACATGACGAAGCATTTTCCCCGAAGAGGACGGTGTCTTGCCGTGGGCTGGG
CGTCCGCCGCCGCGCCGCGTTCCTCGGCAGGAACCGCACGCTGTCCGTGTCCGCCGAGGTACGTCTCATGCTTCAGCTGT
GGATGAATTCATTCGTTTGTTCGCAGCGATTCTCTGTCATCGCCATGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis