Browse Element(s) Details


Os.17910.1.S1_a_at

Description gb:AK119723.1
DB_XREF= gi:37989346
TID=Os.17910.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nifU-like protein (P0671D01.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-G11, full insert sequence.
FL= gb:AK098887.1 gb:AK119723.1 gb:AK062234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4734011/11NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016226biological_processiron-sulfur cluster assembly
GO:0005739cellular_componentmitochondrion
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17910.1.S1_a_at--166--2951Chr01:27374653..27374677 (25 bp)
AAGGCTGCCGAAGCATGAGTGCCAG
LOC_Os01g47340
Os.17910.1.S1_a_at--1096--6151Chr01:27374629..27374653 (25 bp)
GAGGTTCTGTCATGAAGAATGTTGC
LOC_Os01g47340
Os.17910.1.S1_a_at--226--2731Chr01:27374615..27374639 (25 bp)
AAGAATGTTGCAGTGCCCTGCGTAC
LOC_Os01g47340
Os.17910.1.S1_a_at--461--1131Chr01:27374604..27374628 (25 bp)
AGTGCCCTGCGTACTCGTAGTAAAG
LOC_Os01g47340
Os.17910.1.S1_a_at--1105--6991Chr01:27374594..27374618 (25 bp)
GTACTCGTAGTAAAGAACCTGTCAT
LOC_Os01g47340
Os.17910.1.S1_a_at--689--3771Chr01:27374556..27374580 (25 bp)
CTCTGCTTCTTGCTGGCGGGAAATA
LOC_Os01g47340
Os.17910.1.S1_a_at--597--3971Chr01:27374540..27374564 (25 bp)
CGGGAAATAGTGTGTAACGCTCACA
LOC_Os01g47340
Os.17910.1.S1_a_at--41--7451Chr01:27374529..27374553 (25 bp)
GTGTAACGCTCACAAACTCTATGCA
LOC_Os01g47340
Os.17910.1.S1_a_at--343--4831Chr01:27374522..27374546 (25 bp)
GCTCACAAACTCTATGCAGCATGTA
LOC_Os01g47340
Os.17910.1.S1_a_at--21--2551Chr01:27374515..27374539 (25 bp)
AACTCTATGCAGCATGTATCATAAG
LOC_Os01g47340
Os.17910.1.S1_a_at--648--8571Chr01:27374400..27374424 (25 bp)
TGGTACGGAATTACGGTCGCGAGAT
LOC_Os01g47340
Target Sequence 
AAGGCTGCCGAAGCATGAGTGCCAGAGGTTCTGTCATGAAGAATGTTGCAGTGCCCTGCGTACTCGTAGTAAAGAACCTG
TCATGAAGAAGTCTCTGCTCTGCTTCTTGCTGGCGGGAAATAGTGTGTAACGCTCACAAACTCTATGCAGCATGTATCAT
AAGGATGAAGGCAAACATTTTTGAATAAATGTGCTGTCATCTTGAAAGAAAAAAAAAAGGTGTATGCGTGTGTATGGCCT
AGTAATGAACATATGGTACGGAATTACGGTCGCGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17910.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis