Browse Element(s) Details


Os.10680.1.S1_at

Description gb:AK058475.1
DB_XREF= gi:32968493
TID=Os.10680.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10680 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C02, full insert sequence.
FL= gb:AK058475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4916010/11negatively light-regulated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49120Os.47391.1.S1_at11/115+28093305..28099197NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g49130Os.53738.1.S1_at11/115+28099855..2810542116S rRNA processing protein RimM family, putative, expressed
LOC_Os05g49140Os.11617.1.S1_at11/115+28105490..28110750Protein kinase domain containing protein, expressed
LOC_Os05g49150Os.11175.1.S1_at11/115+28118856..28120955Eukaryotic translation initiation factor 3 subunit 7, putative, expressed
LOC_Os05g49160Os.10680.1.S1_at10/115+28122194..28125363negatively light-regulated protein, putative, expressed
LOC_Os05g49164Os.15891.1.A1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.2.S1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.56140.1.S1_x_at7/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.3.S1_x_at3/115+28127135..28129253expressed protein
LOC_Os05g49170Os.13917.1.S1_at10/115+28130538..28132773cold acclimation protein COR413-TM1, putative, expressed
LOC_Os05g49180Os.8463.1.S3_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S2_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S1_at11/115+28136875..28145528expressed protein
LOC_Os05g49200Os.8298.1.S1_at11/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49200Os.13741.1.S1_s_at1/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10680.1.S1_at--887--4911Chr05:28123139..28123163 (25 bp)
GCTTGAAGCACTCCGACCAAAATTG
LOC_Os05g49160
Os.10680.1.S1_at--245--1511NONE
AGCACGTTCACGTCGATTTCTTCAT
NONE
Os.10680.1.S1_at--431--10571Chr05:28122748..28122772 (25 bp)
TTCTTCATGCTTCTGTTGACAACGA
LOC_Os05g49160
Os.10680.1.S1_at--1039--6131Chr05:28122640..28122664 (25 bp)
GAGGGTCTTAATTCACCGACTGAAG
LOC_Os05g49160
Os.10680.1.S1_at--13--731Chr05:28122572..28122596 (25 bp)
ATGATTGCTTTTAACCGATTCCAAG
LOC_Os05g49160
Os.10680.1.S1_at--197--10411Chr05:28122487..28122511 (25 bp)
TTTTGTTCGGGATTTTGCCAGCTGC
LOC_Os05g49160
Os.10680.1.S1_at--289--1611Chr05:28122468..28122492 (25 bp)
AGCTGCTATGCTCATGCCAATTTGT
LOC_Os05g49160
Os.10680.1.S1_at--655--7051Chr05:28122436..28122460 (25 bp)
GTAATAAGTACTCCGTCGCCTGTAA
LOC_Os05g49160
Os.10680.1.S1_at--1084--10191Chr05:28122340..28122364 (25 bp)
TATATTGATGCTCCCTGTTTTGATG
LOC_Os05g49160
Os.10680.1.S1_at--23--2131Chr05:28122288..28122312 (25 bp)
ACAGGCGTTGTGTTGCACTGAATAT
LOC_Os05g49160
Os.10680.1.S1_at--1104--6011Chr05:28122240..28122264 (25 bp)
GAGAGTGATAACCTTTTGTGCTTTA
LOC_Os05g49160
Target Sequence 
GCTTGAAGCACTCCGACCAAAATTGCAGCCTACTCAACAGCAAGCACGTTCACGTCGATTTCTTCATGCTTCTGTTGACA
ACGAAGAGGGTCTTAATTCACCGACTGAAGNTGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGANAAATGATTG
CTTTTAACCGATTCCAAGTNTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTT
TTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTC
GTGCCNCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGACATGGTATCATCCTTATATTGATGCTCC
CTGTTTTGATGCNATGTAACAATCTGAGACGGAATTGCNACAGGCGTTGTGTTGCACTGAATATCTGAGTAAACAAAAGG
AAACTTGGAGAGTGATAACCTTTTGTGCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis