Browse Element(s) Details


Os.11617.1.S1_at

Description gb:AK100389.1
DB_XREF= gi:32985598
TID=Os.11617.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023085N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085N24, full insert sequence.
FL= gb:AK061645.1 gb:AK100389.1 gb:AK099472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4914011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49110NANA5+28081482..28085624retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49120Os.47391.1.S1_at11/115+28093305..28099197NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g49130Os.53738.1.S1_at11/115+28099855..2810542116S rRNA processing protein RimM family, putative, expressed
LOC_Os05g49140Os.11617.1.S1_at11/115+28105490..28110750Protein kinase domain containing protein, expressed
LOC_Os05g49150Os.11175.1.S1_at11/115+28118856..28120955Eukaryotic translation initiation factor 3 subunit 7, putative, expressed
LOC_Os05g49160Os.10680.1.S1_at10/115+28122194..28125363negatively light-regulated protein, putative, expressed
LOC_Os05g49164Os.15891.1.A1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.2.S1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.56140.1.S1_x_at7/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.3.S1_x_at3/115+28127135..28129253expressed protein
LOC_Os05g49170Os.13917.1.S1_at10/115+28130538..28132773cold acclimation protein COR413-TM1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11617.1.S1_at--327--1171Chr05:28106049..28106073 (25 bp)
AGTCAGGCAGTTGTGGAATTGCTCC
LOC_Os05g49140
Os.11617.1.S1_at--896--1531Chr05:28105998..28106022 (25 bp)
AGCATGGCTTTGTGTTGTGCCCATC
LOC_Os05g49140
Os.11617.1.S1_at--880--8691Chr05:28105983..28106007 (25 bp)
TGTGCCCATCCACCCAGATATAAGG
LOC_Os05g49140
Os.11617.1.S1_at--908--1071Chr05:28105899..28105923 (25 bp)
AGGGAAACTCCTATTCCATCTCAGG
LOC_Os05g49140
Os.11617.1.S1_at--455--3491Chr05:28105878..28105902 (25 bp)
CAGGCGGCCATTGTCCATTTGAAAT
LOC_Os05g49140
Os.11617.1.S1_at--676--10731Chr05:28105860..28105884 (25 bp)
TTGAAATGGCAGTGAGCTCGCGATG
LOC_Os05g49140
Os.11617.1.S1_at--941--8191Chr05:28105800..28105824 (25 bp)
GGAATTTCTCGCACTTTATTTGTTG
LOC_Os05g49140
Os.11617.1.S1_at--329--4731Chr05:28105740..28105764 (25 bp)
GCTGGGCTTGTGTACATACCTGCAA
LOC_Os05g49140
Os.11617.1.S1_at--658--3871Chr05:28105680..28105704 (25 bp)
CTGTTGCTTCTTGTGTAAACCTGCA
LOC_Os05g49140
Os.11617.1.S1_at--688--6791Chr05:28105592..28105616 (25 bp)
GTTATGCTAGCTATCCAAAGTTTAA
LOC_Os05g49140
Os.11617.1.S1_at--720--10071Chr05:28105538..28105562 (25 bp)
TAGTGATATTTGAGCCTCCAGCCCA
LOC_Os05g49140
Target Sequence 
AGTCAGGCAGTTGTGGAATTGCTCCATAGATGAGCAAGATGGGAATGCCGGAGCATGGCTTTGTGTTGTGCCCATCCACC
CAGATATAAGGCTGGCAAGGGAATTGGTCGCATCTGGTCATGGATGCAGGCGAAGGTTGAAGAAAGGAGAAGGGAAACTC
CTATTCCATCTCAGGCGGCCATTGTCCATTTGAAATGGCAGTGAGCTCGCGATGGTGAAAGAGGAAAAGAGGGAGAGAAA
GTTCATGGTGGAATTTCTCGCACTTTATTTGTTGTGGAGAAAAGGAGAAAATGTGAATAACAGCACTAGGCTGGGCTTGT
GTACATACCTGCAACCCTTGATTTTTTTTTCTTGTTTTCTTGCTAGAAGCTGTTGCTTCTTGTGTAAACCTGCAAAAGCA
TACTCCGAAAATGAATCATTCGCCAAAAAATTGAGACGGCGGATTATTTGGTAGAATGTTATGCTAGCTATCCAAAGTTT
AATCTTGTTGAAATGAGGAAGCAAAANTATGCTAGTGATATTTGAGCCTCCAGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis