Browse Element(s) Details


Os.15891.1.A1_s_at

Description gb:BI306374
DB_XREF= gi:14981696
DB_XREF=NL_4_G13
CLONE=NL_4_G13
TID=Os.15891.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.15891 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4916411/11expressed protein
LOC_Os01g3810011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49130Os.53738.1.S1_at11/115+28099855..2810542116S rRNA processing protein RimM family, putative, expressed
LOC_Os05g49140Os.11617.1.S1_at11/115+28105490..28110750Protein kinase domain containing protein, expressed
LOC_Os05g49150Os.11175.1.S1_at11/115+28118856..28120955Eukaryotic translation initiation factor 3 subunit 7, putative, expressed
LOC_Os05g49160Os.10680.1.S1_at10/115+28122194..28125363negatively light-regulated protein, putative, expressed
LOC_Os05g49164Os.15891.1.A1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.2.S1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.56140.1.S1_x_at7/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.3.S1_x_at3/115+28127135..28129253expressed protein
LOC_Os05g49170Os.13917.1.S1_at10/115+28130538..28132773cold acclimation protein COR413-TM1, putative, expressed
LOC_Os05g49180Os.8463.1.S3_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S2_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S1_at11/115+28136875..28145528expressed protein
LOC_Os05g49200Os.8298.1.S1_at11/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49200Os.13741.1.S1_s_at1/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15891.1.A1_s_at--638--6335Chr08:14558821..14558845 (25 bp)
GATGCAGTGAAGATTATGTAAGCAA
NONE
Os.15891.1.A1_s_at--364--2815Chr08:14559155..14559179 (25 bp)
AAGATCACCAACTAAGCCTATCCTG
NONE
Os.15891.1.A1_s_at--1006--2535Chr08:14559164..14559188 (25 bp)
AACTAAGCCTATCCTGCTTCATGAT
NONE
Os.15891.1.A1_s_at--90--1695Chr08:14559169..14559193 (25 bp)
AGCCTATCCTGCTTCATGATTGTTG
NONE
Os.15891.1.A1_s_at--997--5134Chr08:14559196..14559220 (25 bp)
GCAAACTCCAACATGCTTGCTGCTG
NONE
Os.15891.1.A1_s_at--630--7635Chr08:14559249..14559273 (25 bp)
GGGAGCCTGCCCTATGTTGTTAGCA
NONE
Os.15891.1.A1_s_at--594--5875Chr08:14559251..14559275 (25 bp)
GAGCCTGCCCTATGTTGTTAGCAGC
NONE
Os.15891.1.A1_s_at--1029--8137Chr11:8042061..8042249 (25 bp)
GGACAATAGCTCAATTGACTGGGAA
NONE
Os.15891.1.A1_s_at--434--1215Chr08:14559703..14559727 (25 bp)
AGTTTCTTTGGATTCAGATCAAAAT
NONE
Os.15891.1.A1_s_at--427--6455Chr08:14559719..14559743 (25 bp)
GATCAAAATAGCTCAACATGGGAAT
NONE
Os.15891.1.A1_s_at--612--3434Chr08:14559752..14559776 (25 bp)
CAGAGGATGGGCAATTCTTGGAAAA
NONE
Target Sequence 
GATGCAGTGAAGATTATGTAAGCAATCTCAAGATGAACAANCCACNCCAACCCCAAGATCACCAACTAAGCCTATCCTGC
TTCATGATTGTTGTTGCAAACTCCAACATGCTTGCTGCTGGTGCAATTTGAGCCGGCTGGTGGCANATGGGAGCCTGCCC
TATGTTGTTAGCAGCTTTTTTCACTCCAAGTCATGCTTGCTGCCTGTGGTCTTGACATATATATAATGAAGGCATATATA
CCCAAAAGGAGGAGCTGTTTGAGGGTTTAAAGGACAATAGCTCAATTGACTGGGAAGTTGTTGTCATATGTCGAGAGCAA
TTTGCTAAATGTTAAAGAGGTGCATCTAACTTTTGTACCCAGTGAACTGCAAATCTGCCCCTTTTCTTTTGATTAANAGT
TTCTTTGGATTCAGATCAAAATAGCTCAACATGGGAATTTTTNTAGCAGAGGATGGGCAATTCTTGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15891.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis