Browse Element(s) Details


Os.8298.1.S1_at

Description gb:AK103421.1
DB_XREF= gi:32988630
TID=Os.8298.1
CNT=106
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.8298 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for aspartic protease, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128K05, full insert sequence.
FL= gb:AK103421.1 gb:AK104838.1 gb:AK066453.1 gb:AK098911.1 gb:D32144.1 gb:AK098906.1 gb:AK067742.1 gb:AK100749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4920011/11Aspartic proteinase oryzasin-1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49160Os.10680.1.S1_at10/115+28122194..28125363negatively light-regulated protein, putative, expressed
LOC_Os05g49164Os.15891.1.A1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.2.S1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.56140.1.S1_x_at7/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.3.S1_x_at3/115+28127135..28129253expressed protein
LOC_Os05g49170Os.13917.1.S1_at10/115+28130538..28132773cold acclimation protein COR413-TM1, putative, expressed
LOC_Os05g49180Os.8463.1.S3_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S2_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S1_at11/115+28136875..28145528expressed protein
LOC_Os05g49200Os.8298.1.S1_at11/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49200Os.13741.1.S1_s_at1/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49210OsAffx.4661.1.S1_x_at11/115+28155290..28157769WRKY DNA binding domain containing protein, expressed
LOC_Os05g49220Os.24720.1.S1_at11/115+28158732..28161500GTP-binding protein Era containing protein, expressed
LOC_Os05g49230Os.20336.1.S1_at11/115+28161759..28166305FtsJ-like methyltransferase family protein, expressed
LOC_Os05g49240NANA5+28170244..28171787RADIALIS, putative, expressed
LOC_Os05g49250Os.46323.1.S1_at11/115+28172364..28173484HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g49260Os.21906.1.S1_at6/115+28175168..28178899Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8298.1.S1_at--281--5711Chr05:28153104..28153128 (25 bp)
GACTCAGGATCTCATCTTGAACTAC
LOC_Os05g49200
Os.8298.1.S1_at--1068--9751Chr05:28153218..28153238 (21 bp)
TAATCAGCTCTGTGACAAGCTCCCA
LOC_Os05g49200
Os.8298.1.S1_at--285--491Chr05:28153256..28153280 (25 bp)
ATCTGTGGACTGTGGCAGCCTTGCA
LOC_Os05g49200
Os.8298.1.S1_at--553--6051Chr05:28153290..28153314 (25 bp)
GAGATTTCATTCACCATTGGAGGCA
LOC_Os05g49200
Os.8298.1.S1_at--973--7351Chr05:28153693..28153717 (25 bp)
GTGACGTTTTCATGGGTGCCTACCA
LOC_Os05g49200
Os.8298.1.S1_at--261--4511Chr05:28153755..28153779 (25 bp)
GCGAAGTCGGCCTAAACGTGTTGTT
LOC_Os05g49200
Os.8298.1.S1_at--545--9811Chr05:28153837..28153861 (25 bp)
TAACTAGCGTATTTATCCGGCGATG
LOC_Os05g49200
Os.8298.1.S1_at--77--6831Chr05:28153889..28153913 (25 bp)
GTTTATGTTTTCCAAGGCCTGAGAT
LOC_Os05g49200
Os.8298.1.S1_at--1059--4531Chr05:28153917..28153941 (25 bp)
GCCCGTCTATTTTAGCTTGGCAAGA
LOC_Os05g49200
Os.8298.1.S1_at--944--1471Chr05:28153939..28153963 (25 bp)
AGAATATCTCGGACCAGTCTCTGTT
LOC_Os05g49200
Os.8298.1.S1_at--320--7171Chr05:28153955..28153979 (25 bp)
GTCTCTGTTCGAATTCTCGTACTGA
LOC_Os05g49200
Target Sequence 
GACTCAGGATCTCATCTTGAACTACATTAATCAGCTCTGTGACAAGCTCCCAAGTCCAATGGGAGAATCATCTGTGGACT
GTGGCAGCCTTGCATCCATGCCTGAGATTTCATTCACCATTGGAGGCAAAAAGTTTGCACTGAAGCCAGAAGAGTATATT
CTGAAGGTTGGTGAAGGAGCTGCTGCCCAGTGCATCAGTGGATTCACAGCCATGGACATCCCTCCTCCCCGTGGTCCTCT
CTGGATCCTGGGTGACGTTTTCATGGGTGCCTACCATACCGTGTTCGACTACGGCAAGATGAGGGTTGGCTTCGCGAAGT
CGGCCTAAACGTGTTGTTGTCACGTTCCTAATGACGAGGTGGACGCATACGCCGAGAGAAGAAGACCGTAGCTTTTAACT
AGCGTATTTATCCGGCGATGTGTGTATATATGCATGCTACATAACATGTTTATGTTTTCCAAGGCCTGAGATGGCGCCCG
TCTATTTTAGCTTGGCAAGAATATCTCGGACCAGTCTCTGTTCGAATTCTCGTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis