Browse Element(s) Details


OsAffx.4661.1.S1_x_at

Description tigr:9633.m04611
TID=OsAffx.4661.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4921011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49170Os.13917.1.S1_at10/115+28130538..28132773cold acclimation protein COR413-TM1, putative, expressed
LOC_Os05g49180Os.8463.1.S3_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S2_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S1_at11/115+28136875..28145528expressed protein
LOC_Os05g49200Os.8298.1.S1_at11/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49200Os.13741.1.S1_s_at1/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49210OsAffx.4661.1.S1_x_at11/115+28155290..28157769WRKY DNA binding domain containing protein, expressed
LOC_Os05g49220Os.24720.1.S1_at11/115+28158732..28161500GTP-binding protein Era containing protein, expressed
LOC_Os05g49230Os.20336.1.S1_at11/115+28161759..28166305FtsJ-like methyltransferase family protein, expressed
LOC_Os05g49240NANA5+28170244..28171787RADIALIS, putative, expressed
LOC_Os05g49250Os.46323.1.S1_at11/115+28172364..28173484HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g49260Os.21906.1.S1_at6/115+28175168..28178899Sugar transporter family protein, expressed
LOC_Os05g49270Os.8275.1.S1_at11/115+28181618..28186195Sugar transporter family protein, expressed
LOC_Os05g49270Os.55709.1.S1_at11/115+28181618..28186195Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4661.1.S1_x_at--973--7251Chr05:28157205..28157229 (25 bp)
GTCCATGCTGCTGTCGGGCTCCATG
LOC_Os05g49210
OsAffx.4661.1.S1_x_at--844--9171Chr05:28157228..28157252 (25 bp)
TGCCGAGCGCGGACGGCAGCCTCAT
LOC_Os05g49210
OsAffx.4661.1.S1_x_at--603--9611Chr05:28157249..28157273 (25 bp)
TCATGGCCGGGTCCAACTTCCTGGC
LOC_Os05g49210
OsAffx.4661.1.S1_x_at--722--9171Chr05:28157465..28157489 (25 bp)
TGCCCCAGCTGTTCGGGCAGAAGCT
LOC_Os05g49210
OsAffx.4661.1.S1_x_at--249--6711Chr05:28157475..28157499 (25 bp)
GTTCGGGCAGAAGCTCTACGACCAG
LOC_Os05g49210
OsAffx.4661.1.S1_x_at--370--1451Chr05:28157483..28157507 (25 bp)
AGAAGCTCTACGACCAGTCCAAGCT
LOC_Os05g49210
OsAffx.4661.1.S1_x_at--354--4631Chr05:28157587..28157611 (25 bp)
GCGATCGCGTCGGACCCAAACTTCA
LOC_Os05g49210
OsAffx.4661.1.S1_x_at--838--4511Chr05:28157626..28157650 (25 bp)
GCCGCGCTGACGTCGTACATAGGCA
LOC_Os05g49210
OsAffx.4661.1.S1_x_at--581--4571Chr05:28157629..28157653 (25 bp)
GCGCTGACGTCGTACATAGGCAGTA
LOC_Os05g49210
OsAffx.4661.1.S1_x_at--175--9891Chr05:28157641..28157665 (25 bp)
TACATAGGCAGTAGAAGCGGCAGCG
LOC_Os05g49210
OsAffx.4661.1.S1_x_at--514--4691Chr05:28157714..28157738 (25 bp)
GCGGCGGCGGCGATAGCTGTAGTAG
LOC_Os05g49210
Target Sequence 
GTCCATGCTGCTGTCGGGCTCCATGCCGAGCGCGGACGGCAGCCTCATGGCCGGGTCCAACTTCCTGGCGCGCGCCGTGC
TGCCGTGCTCGTCCACCGTCGCCACCATCTCGGCGTCGGCGCCGTTCCCGACGGTCACGCTCGACCTCACGCAGACGGCG
CCGCCGCCGCCGCCGGCGTCGTCGACGCAGCCGCAGCCGCCGCGCCCGGAGCCCGCGCAGCTCCAGGCGGCGCTCGCCGA
GGCCGCGCGGCCGGTGGCGCTGCCCCAGCTGTTCGGGCAGAAGCTCTACGACCAGTCCAAGCTCTCCGCCGTGCAGGCCG
TGGCCGGCACCAAGGGCTCCGACGGCGGCGCGCTCGCCGACACGGTGAACGCCGCGACGGCCGCGATCGCGTCGGACCCA
AACTTCACCGCCGTGCTCGCCGCCGCGCTGACGTCGTACATAGGCAGTAGAAGCGGCAGCGGCGGCGCCGGCGCCGGCGG
GAGCAGCGGCACGGTGCAGCCGCTGATGAGCGGCGGCGGCGATAGCTGTAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4661.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis