Browse Element(s) Details


Os.55709.1.S1_at

Description gb:AK108622.1
DB_XREF= gi:32993831
TID=Os.55709.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-D06, full insert sequence.
FL= gb:AK108622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4927011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49210OsAffx.4661.1.S1_x_at11/115+28155290..28157769WRKY DNA binding domain containing protein, expressed
LOC_Os05g49220Os.24720.1.S1_at11/115+28158732..28161500GTP-binding protein Era containing protein, expressed
LOC_Os05g49230Os.20336.1.S1_at11/115+28161759..28166305FtsJ-like methyltransferase family protein, expressed
LOC_Os05g49240NANA5+28170244..28171787RADIALIS, putative, expressed
LOC_Os05g49250Os.46323.1.S1_at11/115+28172364..28173484HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g49260Os.21906.1.S1_at6/115+28175168..28178899Sugar transporter family protein, expressed
LOC_Os05g49270Os.8275.1.S1_at11/115+28181618..28186195Sugar transporter family protein, expressed
LOC_Os05g49270Os.55709.1.S1_at11/115+28181618..28186195Sugar transporter family protein, expressed
LOC_Os05g49280NANA5+28188550..28189325GATA zinc finger family protein
LOC_Os05g49290Os.25370.1.S1_at9/115+28194894..28197963very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os05g49300Os.5739.1.S1_at10/115+28206568..28210000NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55709.1.S1_at--905--4831Chr05:28182526..28182550 (25 bp)
GCTACCGAATTGCTAGGATGGCTTT
LOC_Os05g49270
Os.55709.1.S1_at--868--7851Chr05:28182585..28182609 (25 bp)
GGTAGTTGCATACTTCTGTTTCATA
LOC_Os05g49270
Os.55709.1.S1_at--679--2831Chr05:28182664..28182688 (25 bp)
AAGTATTTTTCATGCTCGTGTTCTG
LOC_Os05g49270
Os.55709.1.S1_at--1154--9091Chr05:28182676..28182700 (25 bp)
TGCTCGTGTTCTGGCATGACTTACA
LOC_Os05g49270
Os.55709.1.S1_at--1097--10471Chr05:28182731..28182755 (25 bp)
TTAATGTCCTGTTTTTGGCATGGTT
LOC_Os05g49270
Os.55709.1.S1_at--1068--6631Chr05:28182766..28182790 (25 bp)
GTTGTACTTCAATGGTCTACTCTTT
LOC_Os05g49270
Os.55709.1.S1_at--1095--1431Chr05:28182903..28182927 (25 bp)
AGAATCTTACTTTCACCACCTTGTT
LOC_Os05g49270
Os.55709.1.S1_at--184--1591Chr05:28182943..28182967 (25 bp)
AGCTCGATGCCTTTGCTTTATAGGA
LOC_Os05g49270
Os.55709.1.S1_at--896--9071Chr05:28182956..28182980 (25 bp)
TGCTTTATAGGACTCATCGTTTCTT
LOC_Os05g49270
Os.55709.1.S1_at--534--6731Chr05:28183036..28183060 (25 bp)
GTATGAGAAAACTTCCTTCCTCCCT
LOC_Os05g49270
Os.55709.1.S1_at--793--3791Chr05:28183055..28183079 (25 bp)
CTCCCTTTTTTATGCGCACTTATAG
LOC_Os05g49270
Target Sequence 
GCTACCGAATTGCTAGGATGGCTTTTTGGGGGTTTGACATTATGTCTGTTCATGAGTTTGGTAGTTGCATACTTCTGTTT
CATACAGATATGAACATATGGTACTCAAGAAATCGGTATAGACGAAAATGTATGGATGAAGTATTTTTCATGCTCGTGTT
CTGGCATGACTTACAGTAGATAAACATACTTTAGGGTAATTTTATTTAATGTCCTGTTTTTGGCATGGTTGCAGTAGTCA
GTTGTACTTCAATGGTCTACTCTTTTAAGCTAACTGAATTGTTTGGTGAATTTTCCAGTCATTGATGATTGCTGCAATTC
CAAACATCATTGGTTGGCTTGCCATCTCCTTTGCAAAAGTATGGCATTACATGGTTCAGAATCTTACTTTCACCACCTTG
TTGCTTTATACAATTTAAGCTCGATGCCTTTGCTTTATAGGACTCATCGTTTCTTTATATGGGACGATTGCTCGAGGGGT
TTGGTGTTGGTGTCATCTCTTATACGGTTTGTATGAGAAAACTTCCTTCCTCCCTTTTTTATGCGCACTTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis