Browse Element(s) Details


Os.20336.1.S1_at

Description gb:AK101119.1
DB_XREF= gi:32986328
TID=Os.20336.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025I04, full insert sequence.
FL= gb:AK101119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4923011/11FtsJ-like methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49180Os.8463.1.S3_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S2_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S1_at11/115+28136875..28145528expressed protein
LOC_Os05g49200Os.8298.1.S1_at11/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49200Os.13741.1.S1_s_at1/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49210OsAffx.4661.1.S1_x_at11/115+28155290..28157769WRKY DNA binding domain containing protein, expressed
LOC_Os05g49220Os.24720.1.S1_at11/115+28158732..28161500GTP-binding protein Era containing protein, expressed
LOC_Os05g49230Os.20336.1.S1_at11/115+28161759..28166305FtsJ-like methyltransferase family protein, expressed
LOC_Os05g49240NANA5+28170244..28171787RADIALIS, putative, expressed
LOC_Os05g49250Os.46323.1.S1_at11/115+28172364..28173484HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g49260Os.21906.1.S1_at6/115+28175168..28178899Sugar transporter family protein, expressed
LOC_Os05g49270Os.8275.1.S1_at11/115+28181618..28186195Sugar transporter family protein, expressed
LOC_Os05g49270Os.55709.1.S1_at11/115+28181618..28186195Sugar transporter family protein, expressed
LOC_Os05g49280NANA5+28188550..28189325GATA zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20336.1.S1_at--970--4331Chr05:28165722..28165746 (25 bp)
CCATGAGGGCTCAGTTCAAGGAGAT
LOC_Os05g49230
Os.20336.1.S1_at--543--3751Chr05:28165731..28165755 (25 bp)
CTCAGTTCAAGGAGATCGATGCTCG
LOC_Os05g49230
Os.20336.1.S1_at--300--4211Chr05:28165925..28165949 (25 bp)
CCCCAGAAGGAGTACGTTGTCGCAA
LOC_Os05g49230
Os.20336.1.S1_at--446--1751Chr05:28165938..28165962 (25 bp)
ACGTTGTCGCAAAGAAGGGCGTTCA
LOC_Os05g49230
Os.20336.1.S1_at--400--1471Chr05:28166007..28166031 (25 bp)
AGAAGGACAAGAGGGCCAGCAAAGT
LOC_Os05g49230
Os.20336.1.S1_at--1055--1811Chr05:28166100..28166124 (25 bp)
AAGCTGGGAGGAAAGCCCAAAACTG
LOC_Os05g49230
Os.20336.1.S1_at--1139--10791Chr05:28166163..28166187 (25 bp)
TTGTTCAGTGGCTCTACTGCTCAAT
LOC_Os05g49230
Os.20336.1.S1_at--1113--3451Chr05:28166168..28166192 (25 bp)
CAGTGGCTCTACTGCTCAATTTTTG
LOC_Os05g49230
Os.20336.1.S1_at--925--3991Chr05:28166257..28166281 (25 bp)
CGTCAGATTATATTTTCAGTCCCAT
LOC_Os05g49230
Os.20336.1.S1_at--620--9631Chr05:28166272..28166296 (25 bp)
TCAGTCCCATCGTTTTTTAAGCCTA
LOC_Os05g49230
Os.20336.1.S1_at--691--11Chr05:28166280..28166304 (25 bp)
ATCGTTTTTTAAGCCTACAACTGAT
LOC_Os05g49230
Target Sequence 
CCATGAGGGCTCAGTTCAAGGAGATCGATGCTCGNCCANCCAAGAAGGTCGCTGAGGNTAAGGCTCGGAAGAAGCGCGTC
NCCATGAAGAAGCTGGATAAGGCGCNCCAGAAGGGCAGATNCCATCGCAGATCAAAACGNCATAAACGANCAGTCAAAGA
GGAAGATGATCGNCAGGATTTNCAAGAAGGCGATTCCAAAGAANCCCCAGAAGGAGTACGTTGTCGCAAAGAAGGGCGTT
CAGGTGAGGGCTGGCAAAGGGAAGATACTGGTGGATAAGCGTATGAAGAAGGACAAGAGGGCCAGCAAAGTGAAGGGTGG
CAAAGGAGCTAAGGGCAAGGGGAAGAAGGGCGGCGGCCAGAAAGGCGGTATGCGAGGGAAAGCTGGGAGGAAAGCCCAAA
ACTGAGTAGNAATAGAGCATGACTGAATTTTCTACTGAATTTTTGTTCAGTGGCTCTACTGCTCAATTTTTGTTTACTTA
TAACTTACCGAATTCATATGTACGGAATTTTTAAATGCGTGAATTATCAGTTGTCTCGTCAGATTATATTTTCAGTCCCA
TCGTTTTTTAAGCCTACAACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis