Browse Element(s) Details


Os.8463.1.S2_at

Description gb:AK066026.1
DB_XREF= gi:32976044
TID=Os.8463.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033104N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044F07, full insert sequence.
FL= gb:AK066026.1 gb:AK102711.1 gb:AK120605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4918011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49150Os.11175.1.S1_at11/115+28118856..28120955Eukaryotic translation initiation factor 3 subunit 7, putative, expressed
LOC_Os05g49160Os.10680.1.S1_at10/115+28122194..28125363negatively light-regulated protein, putative, expressed
LOC_Os05g49164Os.15891.1.A1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.2.S1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.56140.1.S1_x_at7/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.3.S1_x_at3/115+28127135..28129253expressed protein
LOC_Os05g49170Os.13917.1.S1_at10/115+28130538..28132773cold acclimation protein COR413-TM1, putative, expressed
LOC_Os05g49180Os.8463.1.S3_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S2_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S1_at11/115+28136875..28145528expressed protein
LOC_Os05g49200Os.8298.1.S1_at11/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49200Os.13741.1.S1_s_at1/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49210OsAffx.4661.1.S1_x_at11/115+28155290..28157769WRKY DNA binding domain containing protein, expressed
LOC_Os05g49220Os.24720.1.S1_at11/115+28158732..28161500GTP-binding protein Era containing protein, expressed
LOC_Os05g49230Os.20336.1.S1_at11/115+28161759..28166305FtsJ-like methyltransferase family protein, expressed
LOC_Os05g49240NANA5+28170244..28171787RADIALIS, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8463.1.S2_at--1004--1331Chr05:28143951..28143975 (25 bp)
AGAGTCAGCAGGGTGGCTTTCGTCA
LOC_Os05g49180
Os.8463.1.S2_at--1156--3131Chr05:28144002..28144026 (25 bp)
AATTCGGTGGCCATGGGTATCCAGC
LOC_Os05g49180
Os.8463.1.S2_at--65--10151Chr05:28144019..28144043 (25 bp)
TATCCAGCTTTCTACCATTCTCAAA
LOC_Os05g49180
Os.8463.1.S2_at--706--5451Chr05:28144081..28144105 (25 bp)
GAACGGTTTCCAGAATGCCCAATCA
LOC_Os05g49180
Os.8463.1.S2_at--280--4091Chr05:28144188..28144212 (25 bp)
CGACCATGGCGTGCGTGTATCCTGA
LOC_Os05g49180
Os.8463.1.S2_at--338--6911Chr05:28144204..28144228 (25 bp)
GTATCCTGACCAGCTGCAGGGTTTA
LOC_Os05g49180
Os.8463.1.S2_at--1145--1811Chr05:28144281..28144305 (25 bp)
ACGCCATTCAACCAACAGTTTCGAG
LOC_Os05g49180
Os.8463.1.S2_at--668--2111Chr05:28144316..28144340 (25 bp)
ACATGTTCGCGTGTGTTCGTCAGAC
LOC_Os05g49180
Os.8463.1.S2_at--545--1671Chr05:28144367..28144391 (25 bp)
AGCCGAGTTATTATATGTGCCCAAG
LOC_Os05g49180
Os.8463.1.S2_at--655--1151Chr05:28144395..28144419 (25 bp)
AGTCTTCCTTGTAACTCTTCTTGAG
LOC_Os05g49180
Os.8463.1.S2_at--129--2491Chr05:28144424..28144448 (25 bp)
AACAGGTCACCGTTCTGATTTCTAA
LOC_Os05g49180
Target Sequence 
AGAGTCAGCAGGGTGGCTTTCGTCAGGCGCAGCAACCGCAGCAGCACTCGCAATTCGGTGGCCATGGGTATCCAGCTTTC
TACCATTCTCAAAGCCAAGAGCACCACCAGAACCCGGCCGAGGGAGGCCTGAACGGTTTCCAGAATGCCCAATCACAGCC
GTCTCACCAGGGGTGGCAGCAGCACACCGGCTACTGAGGCCTTTACCCTTTGTTATAGTTGGGGTTAAGTTGCTTGCCGA
CCATGGCGTGCGTGTATCCTGACCAGCTGCAGGGTTTAAGCAGCTCGGACTAGCTGAGCCTGTGCCTCGAGCGCTGAGGA
TGGAGGGTCCACGCCATTCAACCAACAGTTTCGAGAGTGTTTTTAACATGTTCGCGTGTGTTCGTCAGACAAGAATGATT
TGTGCTTTGTTTTGATAGCCGAGTTATTATATGTGCCCAAGTGCAGTCTTCCTTGTAACTCTTCTTGAGACCTAACAGGT
CACCGTTCTGATTTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8463.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis