Browse Element(s) Details


Os.13917.1.S1_at

Description gb:AY181210.1
DB_XREF= gi:27902676
TID=Os.13917.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13917 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) cold acclimation protein COR413-TM1 mRNA, complete cds.
PROD=cold acclimation protein COR413-TM1
FL= gb:AY181210.1 gb:AK065748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4917010/11cold acclimation protein COR413-TM1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49140Os.11617.1.S1_at11/115+28105490..28110750Protein kinase domain containing protein, expressed
LOC_Os05g49150Os.11175.1.S1_at11/115+28118856..28120955Eukaryotic translation initiation factor 3 subunit 7, putative, expressed
LOC_Os05g49160Os.10680.1.S1_at10/115+28122194..28125363negatively light-regulated protein, putative, expressed
LOC_Os05g49164Os.15891.1.A1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.2.S1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.56140.1.S1_x_at7/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.3.S1_x_at3/115+28127135..28129253expressed protein
LOC_Os05g49170Os.13917.1.S1_at10/115+28130538..28132773cold acclimation protein COR413-TM1, putative, expressed
LOC_Os05g49180Os.8463.1.S3_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S2_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S1_at11/115+28136875..28145528expressed protein
LOC_Os05g49200Os.8298.1.S1_at11/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49200Os.13741.1.S1_s_at1/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49210OsAffx.4661.1.S1_x_at11/115+28155290..28157769WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009631biological_processcold acclimation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042631biological_processcellular response to water deprivation
GO:0005886cellular_componentplasma membrane
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13917.1.S1_at--1129--811NONE
ATGGTCATTGGACTGCTTTTCTTGC
NONE
Os.13917.1.S1_at--798--10551Chr05:28131350..28131498 (25 bp)
TTCTTCTCCATTCCAGGTGAGCTGG
LOC_Os05g49170
Os.13917.1.S1_at--818--5891Chr05:28131332..28131356 (25 bp)
GAGCTGGAGCTTCCATTGTCAACTA
LOC_Os05g49170
Os.13917.1.S1_at--556--8731Chr05:28131316..28131340 (25 bp)
TGTCAACTATGCTGCTCGTGAGTGT
LOC_Os05g49170
Os.13917.1.S1_at--686--7411Chr05:28131295..28131319 (25 bp)
GTGTTGCTCCTTACCAGTTGATGAA
LOC_Os05g49170
Os.13917.1.S1_at--383--3331Chr05:28130972..28130996 (25 bp)
CACTGTCTTTGGCATTGGCTGGGTA
LOC_Os05g49170
Os.13917.1.S1_at--1121--10331Chr05:28130941..28130965 (25 bp)
TTTTCAGCACTTCACCAGGGTTGGG
LOC_Os05g49170
Os.13917.1.S1_at--15--371Chr05:28130886..28130910 (25 bp)
ATAATTGCAACCTTGGCCATCATCT
LOC_Os05g49170
Os.13917.1.S1_at--327--9491Chr05:28130864..28130888 (25 bp)
TCTGCATCACAGTTATCCCCTTGAT
LOC_Os05g49170
Os.13917.1.S1_at--310--9311Chr05:28130849..28130873 (25 bp)
TCCCCTTGATGATGTTGTTCTGAGT
LOC_Os05g49170
Os.13917.1.S1_at--81--5171Chr05:28130812..28130836 (25 bp)
GCAAGCCGTTGTTCATTGTGGGCAT
LOC_Os05g49170
Target Sequence 
ATGGTCATTGGACTGCTTTTCTTGCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCA
ACTATGCTGCTCGTGAGTGTTGCTCCTTACCAGTTGATGAATCTGAGGGGAACTCAAGGTGGTGCAGCACTGTCTTTGGC
ATTGGCTGGGTATCTCGCTTTTCAGCACTTCACCAGGGTTGGGGGTTTAGGGAAAGCATTTGATCAGGGATCAATAATTG
CAACCTTGGCCATCATCTGCATCACAGTTATCCCCTTGATGATGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTT
CATTGTGGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis