Browse Element(s) Details


Os.46323.1.S1_at

Description gb:AK073046.1
DB_XREF= gi:32983069
TID=Os.46323.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033003A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033003A01, full insert sequence.
FL= gb:AK073046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4925011/11HhH-GPD superfamily base excision DNA repair protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49200Os.8298.1.S1_at11/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49200Os.13741.1.S1_s_at1/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49210OsAffx.4661.1.S1_x_at11/115+28155290..28157769WRKY DNA binding domain containing protein, expressed
LOC_Os05g49220Os.24720.1.S1_at11/115+28158732..28161500GTP-binding protein Era containing protein, expressed
LOC_Os05g49230Os.20336.1.S1_at11/115+28161759..28166305FtsJ-like methyltransferase family protein, expressed
LOC_Os05g49240NANA5+28170244..28171787RADIALIS, putative, expressed
LOC_Os05g49250Os.46323.1.S1_at11/115+28172364..28173484HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g49260Os.21906.1.S1_at6/115+28175168..28178899Sugar transporter family protein, expressed
LOC_Os05g49270Os.8275.1.S1_at11/115+28181618..28186195Sugar transporter family protein, expressed
LOC_Os05g49270Os.55709.1.S1_at11/115+28181618..28186195Sugar transporter family protein, expressed
LOC_Os05g49280NANA5+28188550..28189325GATA zinc finger family protein
LOC_Os05g49290Os.25370.1.S1_at9/115+28194894..28197963very-long-chain fatty acid condensing enzyme, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006284biological_processbase-excision repair
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46323.1.S1_at--635--4331Chr05:28172562..28172586 (25 bp)
CCATCGAGTTGCTAGGTATGTACTG
LOC_Os05g49250
Os.46323.1.S1_at--244--10271Chr05:28172527..28172551 (25 bp)
TTTGTTGATGGTGTGCCTCAGAATT
LOC_Os05g49250
Os.46323.1.S1_at--581--8691Chr05:28172516..28172540 (25 bp)
TGTGCCTCAGAATTGTTGTCCCCAA
LOC_Os05g49250
Os.46323.1.S1_at--231--6631Chr05:28172502..28172526 (25 bp)
GTTGTCCCCAAGCTGTCAAATTTAG
LOC_Os05g49250
Os.46323.1.S1_at--729--6231Chr05:28172478..28172502 (25 bp)
GATGGCAGTGTGTTAGATTCTACTT
LOC_Os05g49250
Os.46323.1.S1_at--977--6751Chr05:28172467..28172491 (25 bp)
GTTAGATTCTACTTACCCGGATTAG
LOC_Os05g49250
Os.46323.1.S1_at--1008--4191Chr05:28172452..28172476 (25 bp)
CCCGGATTAGTGTAGTGCTGCGTGT
LOC_Os05g49250
Os.46323.1.S1_at--112--5711Chr05:28172421..28172445 (25 bp)
GACTATGCTCACACTATGGTTCTTG
LOC_Os05g49250
Os.46323.1.S1_at--133--2191Chr05:28172411..28172435 (25 bp)
ACACTATGGTTCTTGCAAAGTTGCA
LOC_Os05g49250
Os.46323.1.S1_at--242--5131Chr05:28172397..28172421 (25 bp)
GCAAAGTTGCAATCGGAATTCTGAA
LOC_Os05g49250
Os.46323.1.S1_at--840--4811Chr05:28172369..28172393 (25 bp)
GCTCAAATTGAATGTTACTACTTTT
LOC_Os05g49250
Target Sequence 
CCATCGAGTTGCTAGGTATGTACTGTACCATGTAATTTGTTGATGGTGTGCCTCAGAATTGTTGTCCCCAAGCTGTCAAA
TTTAGATGGCAGTGTGTTAGATTCTACTTACCCGGATTAGTGTAGTGCTGCGTGTGTGTGTGACTATGCTCACACTATGG
TTCTTGCAAAGTTGCAATCGGAATTCTGAATATGCTCAAATTGAATGTTACTACTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis