Browse Element(s) Details


Os.5739.1.S1_at

Description gb:AK069724.1
DB_XREF= gi:32979748
TID=Os.5739.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030J11, full insert sequence.
FL= gb:AK069724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4930010/11NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49270Os.8275.1.S1_at11/115+28181618..28186195Sugar transporter family protein, expressed
LOC_Os05g49270Os.55709.1.S1_at11/115+28181618..28186195Sugar transporter family protein, expressed
LOC_Os05g49280NANA5+28188550..28189325GATA zinc finger family protein
LOC_Os05g49290Os.25370.1.S1_at9/115+28194894..28197963very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os05g49300Os.5739.1.S1_at10/115+28206568..28210000NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os05g49310OsAffx.27380.1.S1_at11/115+28213403..28215056Transcription factor MYB21, putative
LOC_Os05g49320OsAffx.4662.1.S1_at11/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49320Os.7971.1.S1_x_at1/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49330NANA5+28217863..28218222hypothetical protein
LOC_Os05g49340NANA5+28221357..28221863hypothetical protein
LOC_Os05g49350Os.47971.1.A1_at11/115+28223817..28224783expressed protein
LOC_Os05g49360NANA5+28226592..28227075hypothetical protein
LOC_Os05g49370Os.50975.1.S1_at11/115+28227633..28228661expressed protein
LOC_Os05g49380Os.17122.1.S1_at11/115+28231795..28235367Protease Do-like 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016226biological_processiron-sulfur cluster assembly
GO:0005739cellular_componentmitochondrion
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5739.1.S1_at--663--8091Chr05:28206924..28206948 (25 bp)
GGACGCCTGCTTCAAGACCTTCGGG
LOC_Os05g49300
Os.5739.1.S1_at--324--9271NONE
TCCTCCGTCGCCAGTGAGTGGGTGA
NONE
Os.5739.1.S1_at--1068--8731Chr05:28209532..28209556 (25 bp)
TGTAAAGCTCCACTGCAGCATGCTT
LOC_Os05g49300
Os.5739.1.S1_at--76--7671Chr05:28209652..28209676 (25 bp)
GGGATAGTCCAGTAGCATAGCATGT
LOC_Os05g49300
Os.5739.1.S1_at--100--6291Chr05:28209697..28209721 (25 bp)
GATGATGTTTATATTGCCACGGAAA
LOC_Os05g49300
Os.5739.1.S1_at--1158--10251Chr05:28209743..28209767 (25 bp)
TTTGTATTAGGCAAAGCCTGCCCCT
LOC_Os05g49300
Os.5739.1.S1_at--166--1631Chr05:28209771..28209795 (25 bp)
AGCGGTTCGTCCAGCTATAGTACAC
LOC_Os05g49300
Os.5739.1.S1_at--942--271Chr05:28209787..28209811 (25 bp)
ATAGTACACCACATGTTGTCGAAGG
LOC_Os05g49300
Os.5739.1.S1_at--863--2511Chr05:28209831..28209855 (25 bp)
AACTTGCCAGTGTCGTTTGTACCCA
LOC_Os05g49300
Os.5739.1.S1_at--1123--7391Chr05:28209840..28209864 (25 bp)
GTGTCGTTTGTACCCAAGTTCTGTA
LOC_Os05g49300
Os.5739.1.S1_at--644--2311Chr05:28209870..28209894 (25 bp)
AAAGTGCTTGATACTGGTGAGTCTA
LOC_Os05g49300
Target Sequence 
GGACGCCTGCTTCAAGACCTTCGGGTGCGGCTCCGCCATCGCCTCCTCCTCCGTCGCCAGTGAGTGGGTGAAGGGAAAAC
AAATGGAGGATGCAGCTTCAATCAAGAACAGTGAGATAGCGAAGCATCTATCGCTTCCGCCTGTAAAGCTCCACTGCAGC
ATGCTTGCAGAGGATGCAATCAAGGCCGCCGTGAAGGATTATGAAGCGAAGAAGGCAAAGTTGGATAAGGGGAACGAGTA
GACATCCTAAAGAGAGAACAGGGGATAGTCCAGTAGCATAGCATGTACTAGTATCATAAAATGTGTGATGATGTTTATAT
TGCCACGGAAATAAACGCATGCAACGTTATAGTTTGTATTAGGCAAAGCCTGCCCCTGGCAGCGGTTCGTCCAGCTATAG
TACACCACATGTTGTCGAAGGTGTACACGAAGGTATGCAAAACTTGCCAGTGTCGTTTGTACCCAAGTTCTGTACATGAA
AAGTGCTTGATACTGGTGAGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis