Browse Element(s) Details


OsAffx.4662.1.S1_at

Description tigr:9633.m04623
TID=OsAffx.4662.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L7L12, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4932011/1150S ribosomal protein L12-1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49290Os.25370.1.S1_at9/115+28194894..28197963very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os05g49300Os.5739.1.S1_at10/115+28206568..28210000NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os05g49310OsAffx.27380.1.S1_at11/115+28213403..28215056Transcription factor MYB21, putative
LOC_Os05g49320OsAffx.4662.1.S1_at11/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49320Os.7971.1.S1_x_at1/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49330NANA5+28217863..28218222hypothetical protein
LOC_Os05g49340NANA5+28221357..28221863hypothetical protein
LOC_Os05g49350Os.47971.1.A1_at11/115+28223817..28224783expressed protein
LOC_Os05g49360NANA5+28226592..28227075hypothetical protein
LOC_Os05g49370Os.50975.1.S1_at11/115+28227633..28228661expressed protein
LOC_Os05g49380Os.17122.1.S1_at11/115+28231795..28235367Protease Do-like 1, chloroplast precursor, putative, expressed
LOC_Os05g49390OsAffx.27381.1.S1_at11/115+28236893..28242625hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4662.1.S1_at--216--8411Chr05:28216234..28216258 (25 bp)
GGCGCCAAGGTGTCAATCGCCTGAC
LOC_Os05g49320
OsAffx.4662.1.S1_at--620--5791Chr05:28216203..28216227 (25 bp)
GACGAACACACGCACTAGGCTACTA
LOC_Os05g49320
OsAffx.4662.1.S1_at--268--10091Chr05:28216188..28216212 (25 bp)
TAGGCTACTAGGACACCCAAATCTT
LOC_Os05g49320
OsAffx.4662.1.S1_at--725--8131Chr05:28216178..28216202 (25 bp)
GGACACCCAAATCTTGCTCAATTTT
LOC_Os05g49320
OsAffx.4662.1.S1_at--335--3071Chr05:28216169..28216193 (25 bp)
AATCTTGCTCAATTTTTTGTGTTGC
LOC_Os05g49320
OsAffx.4662.1.S1_at--402--10411Chr05:28216155..28216179 (25 bp)
TTTTGTGTTGCATTACACCTCGAGA
LOC_Os05g49320
OsAffx.4662.1.S1_at--186--6671Chr05:28216149..28216173 (25 bp)
GTTGCATTACACCTCGAGACATTTT
LOC_Os05g49320
OsAffx.4662.1.S1_at--31--1751Chr05:28216139..28216163 (25 bp)
ACCTCGAGACATTTTGTATCATCGT
LOC_Os05g49320
OsAffx.4662.1.S1_at--822--6891Chr05:28216124..28216148 (25 bp)
GTATCATCGTTGTTTCGCTGCAAGA
LOC_Os05g49320
OsAffx.4662.1.S1_at--1141--4031Chr05:28216117..28216141 (25 bp)
CGTTGTTTCGCTGCAAGAATTGAAT
LOC_Os05g49320
OsAffx.4662.1.S1_at--537--10491Chr05:28216098..28216122 (25 bp)
TTGAATAACTGGATTTGCCAAATCA
LOC_Os05g49320
Target Sequence 
GGCGCCAAGGTGTCAATCGCCTGACCTCCCTGACGAACACACGCACTAGGCTACTAGGACACCCAAATCTTGCTCAATTT
TTTGTGTTGCATTACACCTCGAGACATTTTGTATCATCGTTGTTTCGCTGCAAGAATTGAATAACTGGATTTGCCAAATC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis