Browse Element(s) Details


Os.50975.1.S1_at

Description gb:AK059883.1
DB_XREF= gi:32969901
TID=Os.50975.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-A04, full insert sequence.
FL= gb:AK059883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4937011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49300Os.5739.1.S1_at10/115+28206568..28210000NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os05g49310OsAffx.27380.1.S1_at11/115+28213403..28215056Transcription factor MYB21, putative
LOC_Os05g49320OsAffx.4662.1.S1_at11/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49320Os.7971.1.S1_x_at1/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49330NANA5+28217863..28218222hypothetical protein
LOC_Os05g49340NANA5+28221357..28221863hypothetical protein
LOC_Os05g49350Os.47971.1.A1_at11/115+28223817..28224783expressed protein
LOC_Os05g49360NANA5+28226592..28227075hypothetical protein
LOC_Os05g49370Os.50975.1.S1_at11/115+28227633..28228661expressed protein
LOC_Os05g49380Os.17122.1.S1_at11/115+28231795..28235367Protease Do-like 1, chloroplast precursor, putative, expressed
LOC_Os05g49390OsAffx.27381.1.S1_at11/115+28236893..28242625hypothetical protein
LOC_Os05g49400OsAffx.15164.1.S1_at11/115+28244147..28245511F-box domain containing protein
LOC_Os05g49410Os.49345.1.S1_at10/115+28246150..28247425expressed protein
LOC_Os05g49420Os.19553.1.S1_at11/115+28251474..28256334G-box binding factor 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50975.1.S1_at--781--2771Chr05:28228092..28228116 (25 bp)
AAGAGCGGCTCCACTGGGTCGTCTC
LOC_Os05g49370
Os.50975.1.S1_at--428--1231Chr05:28228171..28228195 (25 bp)
AGTTCGTGTTCTTGAACGCGAGCTC
LOC_Os05g49370
Os.50975.1.S1_at--718--371Chr05:28228246..28228270 (25 bp)
ATGACGGTGCCCTGAGCTACTACGC
LOC_Os05g49370
Os.50975.1.S1_at--89--951Chr05:28228336..28228360 (25 bp)
AGGACATCGTCGGACTTTTCGCCAA
LOC_Os05g49370
Os.50975.1.S1_at--912--10151Chr05:28228383..28228407 (25 bp)
TATCACCCGTTCTGACGTCGCGAAC
LOC_Os05g49370
Os.50975.1.S1_at--452--7231Chr05:28228399..28228423 (25 bp)
GTCGCGAACGTCTTCGATACCAATG
LOC_Os05g49370
Os.50975.1.S1_at--827--6391Chr05:28228430..28228454 (25 bp)
GATCGATTTTATTCTCTTCTCTCTG
LOC_Os05g49370
Os.50975.1.S1_at--763--9831Chr05:28228510..28228534 (25 bp)
TAAATTTGTTTGATGCGTGTGGCTG
LOC_Os05g49370
Os.50975.1.S1_at--337--8491Chr05:28228529..28228553 (25 bp)
TGGCTGATAAGTTTGGCTGCACGCT
LOC_Os05g49370
Os.50975.1.S1_at--1134--8311Chr05:28228543..28228567 (25 bp)
GGCTGCACGCTTTAATTTGTTTGTC
LOC_Os05g49370
Os.50975.1.S1_at--756--10771Chr05:28228609..28228633 (25 bp)
TTGAGTGTAACAGAGCTTGCATAAT
LOC_Os05g49370
Target Sequence 
AAGAGCGGCTCCACTGGGTCGTCTCTCCTCCGGTGGCGCCAGCGCTCCATCGGCCGGAGCCACAGCGACGGCAAGGAGAA
GTTCGTGTTCTTGAACGCGAGCTCCTCCTCCTCCGGCTCCGAGCACAAGGGCGGCAGAGGCGGCGAGGTGGGCCATGACG
GTGCCCTGAGCTACTACGCCAACGGCGGCAGCAGGGGCGGCGGCGGCGGCGGCGGTCGCCGGAGGTCGTTCCTTCCCTAC
CGGCAGGACATCGTCGGACTTTTCGCCAACGCCACCGCGTTCCGNCGGAGCTATCACCCGTTCTGACGTCGCGAACGTCT
TCGATACCAATGNTGCTCGATCGATTTTATTCTCTTCTCTCTGCAGGNTAAGTATGTACTTAATTACTTGNCACNATAAA
TTCGTGAGCAGGTTTAATTAAATTTGTTTGATGCGTGTGGCTGATAAGTTTGGCTGCACGCTTTAATTTGTTTGTCTGCG
GTAAATGGTAATTGTAACAATTTATTCCAAAAAAATGTTGAGTGTAACAGAGCTTGCATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis