Browse Element(s) Details


Os.53738.1.S1_at

Description gb:AK099641.1
DB_XREF= gi:32984850
TID=Os.53738.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060F08, full insert sequence.
FL= gb:AK099641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4913011/1116S rRNA processing protein RimM family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49110NANA5+28081482..28085624retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49120Os.47391.1.S1_at11/115+28093305..28099197NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g49130Os.53738.1.S1_at11/115+28099855..2810542116S rRNA processing protein RimM family, putative, expressed
LOC_Os05g49140Os.11617.1.S1_at11/115+28105490..28110750Protein kinase domain containing protein, expressed
LOC_Os05g49150Os.11175.1.S1_at11/115+28118856..28120955Eukaryotic translation initiation factor 3 subunit 7, putative, expressed
LOC_Os05g49160Os.10680.1.S1_at10/115+28122194..28125363negatively light-regulated protein, putative, expressed
LOC_Os05g49164Os.15891.1.A1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.2.S1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.56140.1.S1_x_at7/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.3.S1_x_at3/115+28127135..28129253expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006364biological_processrRNA processing
GO:0007046biological_processribosome biogenesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53738.1.S1_at--267--2371Chr05:28104835..28104859 (25 bp)
AAACCTTGGGCATCCGTTGCTGTTT
LOC_Os05g49130
Os.53738.1.S1_at--81--6291Chr05:28104977..28105001 (25 bp)
GATGTTACTAAGCTCAGGTTCTCTG
LOC_Os05g49130
Os.53738.1.S1_at--187--8071Chr05:28105009..28105033 (25 bp)
GGAGCAACATGTGCACGTCGAGCAT
LOC_Os05g49130
Os.53738.1.S1_at--331--8451Chr05:28105039..28105063 (25 bp)
TGGCCAATGGGTCGATGTCCAACCA
LOC_Os05g49130
Os.53738.1.S1_at--655--2591Chr05:28105069..28105093 (25 bp)
AACGAACTGTCATCGCTTGCATGCA
LOC_Os05g49130
Os.53738.1.S1_at--1119--9051Chr05:28105086..28105110 (25 bp)
TGCATGCAGAGGTCACTAGTGTCTT
LOC_Os05g49130
Os.53738.1.S1_at--817--10071Chr05:28105102..28105126 (25 bp)
TAGTGTCTTGAACTACTGCTCTCCT
LOC_Os05g49130
Os.53738.1.S1_at--131--1991Chr05:28105116..28105140 (25 bp)
ACTGCTCTCCTGACAAGGTGTGTGT
LOC_Os05g49130
Os.53738.1.S1_at--645--6931Chr05:28105239..28105263 (25 bp)
GTAGATTTAACACCAGTTGACCCAT
LOC_Os05g49130
Os.53738.1.S1_at--898--1231Chr05:28105253..28105277 (25 bp)
AGTTGACCCATTCATGTGCGGCCTA
LOC_Os05g49130
Os.53738.1.S1_at--528--4451Chr05:28105273..28105297 (25 bp)
GCCTACTTGTATGTTCTTCGGCAAA
LOC_Os05g49130
Target Sequence 
AAACCTTGGGCATCCGTTGCTGTTTGGGGCTGTCAGCTCCTTTGGCGCGGATGCTGGCCTCATGCTTCGCAAGAGCAGCA
AGGAAACAGAAGATGATTTTGATCTGATTCTTTCCATCAACCACGTAAACAAGATGTGCAGAGATGTTACTAAGCTCAGG
TTCTCTGCGCAGCAGGAGCAACATGTGCACGTCGAGCATGTCGATGGCCAATGGGTCGATGTCCAACCAGAGGCAACGAA
CTGTCATCGCTTGCATGCAGAGGTCACTAGTGTCTTGAACTACTGCTCTCCTGACAAGGTGTGTGTCATAGAGATTGTCC
AGCAATAGGTTCTACCTGACAAGGTGTATCATAGAAATACAGTAAGCACAAGGTAGTAGTTTTGTTTTTGAGAAGTGTTG
GATGGTAGATTTAACACCAGTTGACCCATTCATGTGCGGCCTACTTGTATGTTCTTCGGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis