Browse Element(s) Details


Os.47391.1.S1_at

Description gb:AK099836.1
DB_XREF= gi:32985045
TID=Os.47391.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106J19, full insert sequence.
FL= gb:AK099836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4912011/11NLI interacting factor-like phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49100Os.10609.1.S1_at1/115+28071421..28074645WRKY DNA binding domain containing protein, expressed
LOC_Os05g49100Os.28828.1.S2_at1/115+28071421..28074645WRKY DNA binding domain containing protein, expressed
LOC_Os05g49110NANA5+28081482..28085624retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49120Os.47391.1.S1_at11/115+28093305..28099197NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g49130Os.53738.1.S1_at11/115+28099855..2810542116S rRNA processing protein RimM family, putative, expressed
LOC_Os05g49140Os.11617.1.S1_at11/115+28105490..28110750Protein kinase domain containing protein, expressed
LOC_Os05g49150Os.11175.1.S1_at11/115+28118856..28120955Eukaryotic translation initiation factor 3 subunit 7, putative, expressed
LOC_Os05g49160Os.10680.1.S1_at10/115+28122194..28125363negatively light-regulated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005694cellular_componentchromosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47391.1.S1_at--470--1451Chr05:28097686..28097710 (25 bp)
AGAAGAGGCCACATGTCGACACCTT
LOC_Os05g49120
Os.47391.1.S1_at--915--6451Chr05:28097909..28097932 (24 bp)
GATAATCGACAATTCTCCAGAGGTT
LOC_Os05g49120
Os.47391.1.S1_at--201--1651Chr05:28098168..28098192 (25 bp)
AGCGACCCGGCTGACAAATCATTGG
LOC_Os05g49120
Os.47391.1.S1_at--1025--6631Chr05:28098192..28098216 (25 bp)
GTTGAGCTGATACCCTTCCTGGAAG
LOC_Os05g49120
Os.47391.1.S1_at--223--9131Chr05:28098221..28098245 (25 bp)
TGCTGTTGCAGATGACGTCCGACCA
LOC_Os05g49120
Os.47391.1.S1_at--283--6791Chr05:28098260..28098284 (25 bp)
GTTAGGCCGTCCAAGATCAATTGCT
LOC_Os05g49120
Os.47391.1.S1_at--449--9971Chr05:28098361..28098385 (25 bp)
TACCTGTGTGGTACATCATCGAACT
LOC_Os05g49120
Os.47391.1.S1_at--869--511Chr05:28098378..28098402 (25 bp)
ATCGAACTAGTTTCCCATTGCTTCT
LOC_Os05g49120
Os.47391.1.S1_at--545--4311Chr05:28098392..28098416 (25 bp)
CCATTGCTTCTTTTACCGAGTTTGA
LOC_Os05g49120
Os.47391.1.S1_at--41--3631Chr05:28098464..28098488 (25 bp)
CTTGCAGTTCTGTACGTAGCGTCTA
LOC_Os05g49120
Os.47391.1.S1_at--729--6951Chr05:28098479..28098503 (25 bp)
GTAGCGTCTACCTTAAACTAGCCTA
LOC_Os05g49120
Target Sequence 
AGAAGAGGCCACATGTCGACACCTTCCTTCAGAAGGTGTCTGAGATGTTTAAGATGGTAGCTATCTTAAGGATCTGACTG
TTATTGTTGCTGATCTCGCAAAGGTTGTGATAATCGACAATTCTCCAGAGGTTTTCCGGCTACAGGAGGAAAATGGTATA
CCTATAGAGAGTTGGACCAGCGACCCGGCTGACAAATCATTGGTTGAGCTGATACCCTTCCTGGAAGCCATTGCTGTTGC
AGATGACGTCCGACCAATTATCGCCCAAATGTTAGGCCGTCCAAGATCAATTGCTTAGATGTTGCGACAAATATCAGAAA
CTGCTCATTTGCTTATTTTACAAAGAATTTTTTCCCCATAGTTGAACAGGATACCTGTGTGGTACATCATCGAACTAGTT
TCCCATTGCTTCTTTTACCGAGTTTGATTCCCAAGATTTTGTGAATTCTTTTGGTGGGAATGTTAATTTTTGTACTTGCA
GTTCTGTACGTAGCGTCTACCTTAAACTAGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis