Browse Element(s) Details


OsAffx.23548.1.S1_x_at

Description gb:NM_193524.1
DB_XREF= gi:34914131
GEN=P0496H05.15
TID=OsAffx.23548.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0496H05.15 (P0496H05.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g380903/11hypothetical protein
LOC_Os01g381201/11hypothetical protein
LOC_Os03g493501/11Lipoxygenase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38040NANA1+21639458..21641589hypothetical protein
LOC_Os01g38049OsAffx.31869.1.S1_at8/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_s_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_x_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.5.S1_x_at2/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.2.S1_at1/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.1.S1_at8/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_s_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_x_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.5.S1_x_at2/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.2.S1_at1/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38070NANA1+21655604..21656863hypothetical protein
LOC_Os01g38080NANA1+21657591..21658940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38090OsAffx.23548.1.S1_x_at3/111+21661727..21661927hypothetical protein
LOC_Os01g38100Os.15891.1.A1_s_at11/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.1.S1_at11/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.2.S1_s_at9/111+21664820..21667800expressed protein
LOC_Os01g38100Os.56140.1.S1_x_at7/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.3.S1_x_at5/111+21664820..21667800expressed protein
LOC_Os01g38110Os.34962.1.S1_at2/111+21669225..21670799Cytochrome P450 family protein, expressed
LOC_Os01g38120OsAffx.23549.1.S1_at11/111+21674883..21676521hypothetical protein
LOC_Os01g38120OsAffx.23549.1.S1_x_at11/111+21674883..21676521hypothetical protein
LOC_Os01g38120OsAffx.23548.1.S1_x_at1/111+21674883..21676521hypothetical protein
LOC_Os01g38130OsAffx.11370.1.S1_at11/111+21676685..21677226hypothetical protein
LOC_Os01g38130OsAffx.11370.1.S1_x_at11/111+21676685..21677226hypothetical protein
LOC_Os01g38140Os.25754.2.S1_x_at3/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38140Os.53479.1.S1_x_at1/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38140Os.52574.2.S1_x_at1/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23548.1.S1_x_at--183--3351Chr01:21662162..21662273 (25 bp)
CACCGTGTTGGACGAGGCCGCGGAC
NONE
OsAffx.23548.1.S1_x_at--824--9671Chr01:21662101..21662125 (25 bp)
TCACCTTCGTTCTGGGCGAGGCGGC
NONE
OsAffx.23548.1.S1_x_at--977--3472Chr03:28039918..28039937 (20 bp)
CAGGTTCGGCGTGACGTTCGACCGC
LOC_Os03g49350
OsAffx.23548.1.S1_x_at--704--6172Chr03:9037222..9037721 (25 bp)
GAGGAGTGATGGAGATCCCGGCCAT
NONE
OsAffx.23548.1.S1_x_at--412--1291Chr01:21662023..21662047 (25 bp)
AGATCCCGGCCATGGAGATCGACGA
NONE
OsAffx.23548.1.S1_x_at--820--1271Chr01:21662008..21662032 (25 bp)
AGATCGACGACATGAAGCGGCCGCT
NONE
OsAffx.23548.1.S1_x_at--486--9672Chr01:21675205..21675229 (25 bp)
TCACCAGCTACGTGGCGCTGATGGG
LOC_Os01g38120
OsAffx.23548.1.S1_x_at--309--4131Chr01:21661908..21661932 (25 bp)
CGCTGATGGGCAGCCTCATCGTGAC
NONE
OsAffx.23548.1.S1_x_at--1008--4451Chr01:21661896..21661920 (25 bp)
GCCTCATCGTGACGGCGCGCGACTT
LOC_Os01g38090
OsAffx.23548.1.S1_x_at--536--1791Chr01:21661854..21661878 (25 bp)
ACCGCATCCTGGAGAGCCTGCTGGC
LOC_Os01g38090
OsAffx.23548.1.S1_x_at--941--2011Chr01:21661773..21661797 (25 bp)
ACTACAAGGAGCAGGCTTTCGCGGG
LOC_Os01g38090
Target Sequence 
CACCGTGTTGGACGAGGCCGCGGACCGCACCGCCGTGTCCGCGGACGATACCGCGCGCCACCGAGCTCCTCGAGGCCGGG
GGTCACCTTCGTTCTGGGCGAGGCGGCGGCGCCGGAGTACAGGTTCGGCGTGACGTTCGACCGCCGGAGAGGAGTGATGG
AGATCCCGGCCATGGAGATCGACGACATGAAGCGGCCGCTCCTCGTGCCGGGCCTCCTCACCAGCTACGTGGCGCTGATG
GGCAGCCTCATCGTGACGGCGCGCGACTTCACGCTGCTCCGCCGGCACCGCATCCTGGAGAGCCTGCTGGCCGACGACGA
GGAGGCGGCCCGGTTCTTCGCCCGCCTCGGCGACTGCGGCGCCATCAACTACAAGGAGCAGGCTTTCGCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23548.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis