Browse Element(s) Details


Os.34962.1.S1_at

Description gb:AK069494.1
DB_XREF= gi:32979518
TID=Os.34962.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Cyt-P450 monooxygenase (P0496H05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025F12, full insert sequence.
FL= gb:AK069494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g381102/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38049OsAffx.31869.1.S1_at8/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_s_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_x_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.5.S1_x_at2/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.2.S1_at1/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.1.S1_at8/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_s_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_x_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.5.S1_x_at2/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.2.S1_at1/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38070NANA1+21655604..21656863hypothetical protein
LOC_Os01g38080NANA1+21657591..21658940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38090OsAffx.23548.1.S1_x_at3/111+21661727..21661927hypothetical protein
LOC_Os01g38100Os.15891.1.A1_s_at11/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.1.S1_at11/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.2.S1_s_at9/111+21664820..21667800expressed protein
LOC_Os01g38100Os.56140.1.S1_x_at7/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.3.S1_x_at5/111+21664820..21667800expressed protein
LOC_Os01g38110Os.34962.1.S1_at2/111+21669225..21670799Cytochrome P450 family protein, expressed
LOC_Os01g38120OsAffx.23549.1.S1_at11/111+21674883..21676521hypothetical protein
LOC_Os01g38120OsAffx.23549.1.S1_x_at11/111+21674883..21676521hypothetical protein
LOC_Os01g38120OsAffx.23548.1.S1_x_at1/111+21674883..21676521hypothetical protein
LOC_Os01g38130OsAffx.11370.1.S1_at11/111+21676685..21677226hypothetical protein
LOC_Os01g38130OsAffx.11370.1.S1_x_at11/111+21676685..21677226hypothetical protein
LOC_Os01g38140Os.25754.2.S1_x_at3/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38140Os.53479.1.S1_x_at1/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38140Os.52574.2.S1_x_at1/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38150OsAffx.20387.1.S1_x_at1/111+21692821..21696228retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34962.1.S1_at--287--611Chr01:21669353..21669377 (25 bp)
ATGCCCTACATACTGGCGCTGATGC
LOC_Os01g38110
Os.34962.1.S1_at--343--5971Chr01:21669269..21669293 (25 bp)
GAGAAGTTCATGTCCGTCAACGTGC
LOC_Os01g38110
Os.34962.1.S1_at--1072--7411Chr01:21669177..21669201 (25 bp)
GTGTTGCTCGATCTGTTATGTGTAT
NONE
Os.34962.1.S1_at--617--10191Chr01:21669147..21669171 (25 bp)
TATATAGTTTGTGCGTGTGCCACGT
NONE
Os.34962.1.S1_at--1000--6951Chr01:21669119..21669143 (25 bp)
GTAGCTACAGTATTATTCCTAGTTG
NONE
Os.34962.1.S1_at--445--9171Chr01:21669103..21669127 (25 bp)
TCCTAGTTGGTTTCGTGTAATAAGC
NONE
Os.34962.1.S1_at--563--1551Chr01:21669081..21669105 (25 bp)
AGCTACTTAAATCAGGACTCTCACA
NONE
Os.34962.1.S1_at--622--5711Chr01:21669066..21669090 (25 bp)
GACTCTCACAGTCCTAGATATTTGT
NONE
Os.34962.1.S1_at--333--10411Chr01:21669034..21669058 (25 bp)
TTATTCATATAGTCACCACAGCCCC
NONE
Os.34962.1.S1_at--193--4531Chr01:21669014..21669038 (25 bp)
GCCCCATAGGCCATAATATACGTCT
NONE
Os.34962.1.S1_at--997--10171Chr01:21668998..21669022 (25 bp)
TATACGTCTAGCATGCATCTATGAT
NONE
Target Sequence 
ATGCCCTACATACTGGCGCTGATGCTGCGCGAGTTCGAGTGGCGGCTCCCCGACGGCGTGTCGCCGGAGGAGCTGGACGT
CAGCGAGAAGTTCATGTCCGTCAACGTGCTCGCCGTCCCTCTCAAGGCCGTGCCTGTCAAGGTGATCAACTGAGACTAGG
GCTAGTTGAGCTAGTTGTGTTGCTCGATCTGTTATGTGTATTGGATTATATAGTTTGTGCGTGTGCCACGTATAGTAGCT
ACAGTATTATTCCTAGTTGGTTTCGTGTAATAAGCTACTTAAATCAGGACTCTCACAGTCCTAGATATTTGTTATTCCAT
TATTCATATAGTCACCACAGCCCCATAGGCCATAATATACGTCTAGCATGCATCTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis