Browse Element(s) Details


OsAffx.11370.1.S1_at

Description tigr:9629.m03616
TID=OsAffx.11370.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3813011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38058OsAffx.31869.1.S1_at8/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_s_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_x_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.5.S1_x_at2/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.2.S1_at1/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38070NANA1+21655604..21656863hypothetical protein
LOC_Os01g38080NANA1+21657591..21658940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38090OsAffx.23548.1.S1_x_at3/111+21661727..21661927hypothetical protein
LOC_Os01g38100Os.15891.1.A1_s_at11/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.1.S1_at11/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.2.S1_s_at9/111+21664820..21667800expressed protein
LOC_Os01g38100Os.56140.1.S1_x_at7/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.3.S1_x_at5/111+21664820..21667800expressed protein
LOC_Os01g38110Os.34962.1.S1_at2/111+21669225..21670799Cytochrome P450 family protein, expressed
LOC_Os01g38120OsAffx.23549.1.S1_at11/111+21674883..21676521hypothetical protein
LOC_Os01g38120OsAffx.23549.1.S1_x_at11/111+21674883..21676521hypothetical protein
LOC_Os01g38120OsAffx.23548.1.S1_x_at1/111+21674883..21676521hypothetical protein
LOC_Os01g38130OsAffx.11370.1.S1_at11/111+21676685..21677226hypothetical protein
LOC_Os01g38130OsAffx.11370.1.S1_x_at11/111+21676685..21677226hypothetical protein
LOC_Os01g38140Os.25754.2.S1_x_at3/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38140Os.53479.1.S1_x_at1/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38140Os.52574.2.S1_x_at1/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38150OsAffx.20387.1.S1_x_at1/111+21692821..21696228retrotransposon protein, putative, unclassified
LOC_Os01g38160NANA1+21700060..21702347retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11370.1.S1_at--224--3931Chr01:21676732..21676756 (25 bp)
CGGCGCCATGAAGTTGTCAGACCTA
LOC_Os01g38130
OsAffx.11370.1.S1_at--612--4551Chr01:21676734..21676758 (25 bp)
GCGCCATGAAGTTGTCAGACCTAGG
LOC_Os01g38130
OsAffx.11370.1.S1_at--359--6631Chr01:21676744..21676768 (25 bp)
GTTGTCAGACCTAGGCAAGCCTGAC
LOC_Os01g38130
OsAffx.11370.1.S1_at--558--10091Chr01:21676755..21676779 (25 bp)
TAGGCAAGCCTGACGAGGACTTGTT
LOC_Os01g38130
OsAffx.11370.1.S1_at--1074--2651Chr01:21676760..21676784 (25 bp)
AAGCCTGACGAGGACTTGTTCGTGT
LOC_Os01g38130
OsAffx.11370.1.S1_at--777--8651Chr01:21676782..21676806 (25 bp)
TGTGGAGAGGAGATACCAGTCGATT
LOC_Os01g38130
OsAffx.11370.1.S1_at--112--991Chr01:21676789..21676813 (25 bp)
AGGAGATACCAGTCGATTAGAGAGT
LOC_Os01g38130
OsAffx.11370.1.S1_at--520--6491Chr01:21676793..21676817 (25 bp)
GATACCAGTCGATTAGAGAGTTTTG
LOC_Os01g38130
OsAffx.11370.1.S1_at--348--10251Chr01:21676814..21676838 (25 bp)
TTTGGGAGCGAGCATGGCCGTGGTC
LOC_Os01g38130
OsAffx.11370.1.S1_at--788--9411Chr01:21676837..21676861 (25 bp)
TCGTGGTCGTGGCTCTCCTGGCTTT
LOC_Os01g38130
OsAffx.11370.1.S1_at--587--5451Chr01:21676892..21676916 (25 bp)
GAACGGTTTGATTGGCTGGAAATGA
LOC_Os01g38130
Target Sequence 
CGGCGCCATGAAGTTGTCAGACCTAGGCAAGCCTGACGAGGACTTGTTCGTGTGGAGAGGAGATACCAGTCGATTAGAGA
GTTTTGGGAGCGAGCATGGCCGTGGTCGTGGTCGTGGCTCTCCTGGCTTTGCGAAGTGGACCGTTCAAGAGGCGCCTGGG
GAACGGTTTGATTGGCTGGAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis