Browse Element(s) Details


OsAffx.23549.1.S1_x_at

Description gb:NM_193527.1
DB_XREF= gi:34914137
GEN=P0496H05.18
TID=OsAffx.23549.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0496H05.18 (P0496H05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3812011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38058OsAffx.31869.1.S1_at8/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_s_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_x_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.5.S1_x_at2/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.2.S1_at1/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38070NANA1+21655604..21656863hypothetical protein
LOC_Os01g38080NANA1+21657591..21658940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38090OsAffx.23548.1.S1_x_at3/111+21661727..21661927hypothetical protein
LOC_Os01g38100Os.15891.1.A1_s_at11/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.1.S1_at11/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.2.S1_s_at9/111+21664820..21667800expressed protein
LOC_Os01g38100Os.56140.1.S1_x_at7/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.3.S1_x_at5/111+21664820..21667800expressed protein
LOC_Os01g38110Os.34962.1.S1_at2/111+21669225..21670799Cytochrome P450 family protein, expressed
LOC_Os01g38120OsAffx.23549.1.S1_at11/111+21674883..21676521hypothetical protein
LOC_Os01g38120OsAffx.23549.1.S1_x_at11/111+21674883..21676521hypothetical protein
LOC_Os01g38120OsAffx.23548.1.S1_x_at1/111+21674883..21676521hypothetical protein
LOC_Os01g38130OsAffx.11370.1.S1_at11/111+21676685..21677226hypothetical protein
LOC_Os01g38130OsAffx.11370.1.S1_x_at11/111+21676685..21677226hypothetical protein
LOC_Os01g38140Os.25754.2.S1_x_at3/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38140Os.53479.1.S1_x_at1/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38140Os.52574.2.S1_x_at1/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38150OsAffx.20387.1.S1_x_at1/111+21692821..21696228retrotransposon protein, putative, unclassified
LOC_Os01g38160NANA1+21700060..21702347retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23549.1.S1_x_at--536--8752Chr01:21689565..21689589 (25 bp)
TGTACTACGAGTGCTTCGTTCCCAA
NONE
OsAffx.23549.1.S1_x_at--689--6111Chr01:21675487..21675511 (25 bp)
GAGTGCTTCGTTCCCAAGCGGCCAC
LOC_Os01g38120
OsAffx.23549.1.S1_x_at--334--4691Chr01:21675416..21675440 (25 bp)
GCGGACGATTCTGCGTGCCAGCGAA
LOC_Os01g38120
OsAffx.23549.1.S1_x_at--1121--4131Chr01:21675298..21675375 (25 bp)
CGCGGGACAGAGAGATCGACGACAT
LOC_Os01g38120
OsAffx.23549.1.S1_x_at--883--5651Chr01:21675278..21675302 (25 bp)
GACATGAAGCGACCGCTCCTCGTCA
LOC_Os01g38120
OsAffx.23549.1.S1_x_at--119--9631Chr01:21675250..21675274 (25 bp)
TCATGGCGTTCGAGCAGACGCAGGC
LOC_Os01g38120
OsAffx.23549.1.S1_x_at--485--9672Chr01:21675205..21675229 (25 bp)
TCACCAGCTACGTGGCGCTGATGGG
LOC_Os01g38120
OsAffx.23549.1.S1_x_at--1004--4411Chr01:21675062..21675086 (25 bp)
GCCATGGACTTCAGCCGCCAGGCTT
LOC_Os01g38120
OsAffx.23549.1.S1_x_at--289--8931Chr01:21674964..21674988 (25 bp)
TGACTACTTCGGCAGCCCGTGGTCG
LOC_Os01g38120
OsAffx.23549.1.S1_x_at--54--8612Chr03:2119504..2119553 (24 bp)
TGGTCGGCCATCTCCGTCGTAGTCG
NONE
OsAffx.23549.1.S1_x_at--319--4031Chr01:21674928..21674952 (25 bp)
CGTAGTCGCGGCGATCGTCGTCTTC
LOC_Os01g38120
Target Sequence 
TGTACTACGAGTGCTTCGTTCCCAAGCGGCCACGGCCGCGGCTGCCCGAGTCGGCCCGGAAGGCACCGGCGGCGCCGACG
CGGACGATTCTGCGTGCCAGCGAACTGCGGGAGGCGGGTGTCACCCTCGTGCGGCGGAGCGCGGCGCGGGACAGAGAGAT
CGACGACATGAAGCGACCGCTCCTCGTCAACCTCATGGCGTTCGAGCAGACGCAGGCGGGCGAGGAGCCGCGCCTCCTCA
CCAGCTACGTGGCGCTGATGGGCCAGCTCATCGTGACGGCGCGCGACGTCGAGCTGCTCCGCCGGCGCGGCGTCCTGGAG
AGCCTGCTGGCCGACGACGAGGAGGCGGCCCGGTTCTTCAGCCGCCTCGGCGAGGGCGCCGCCATGGACTTCAGCCGCCA
GGCTTTCGCCGGGCTGTACGAGGACGTGCGCGGGTACTGTGGCTCGTGGTGGCACCGCAACAGGGCGGCGCTCCGGCGTG
ACTACTTCGGCAGCCCGTGGTCGGCCATCTCCGTCGTAGTCGCGGCGATCGTCGTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23549.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis