Browse Element(s) Details


OsAffx.5436.1.S1_at

Description tigr:9635.m02448
TID=OsAffx.5436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to dimethylaniline monooxygenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2554011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25480OsAffx.5434.1.S1_at11/117+14592890..14593169hypothetical protein
LOC_Os07g25484NANA7+14598828..14599110hypothetical protein
LOC_Os07g25490OsAffx.5435.1.S1_at11/117+14600782..14603244hypothetical protein
LOC_Os07g25500OsAffx.16405.1.S1_at11/117+14604550..14606094pentatricopeptide, putative, expressed
LOC_Os07g25510OsAffx.28579.1.S1_at11/117+14607567..14608065hypothetical protein
LOC_Os07g25520NANA7+14608507..14608809hypothetical protein
LOC_Os07g25530OsAffx.16406.1.S1_at11/117+14612172..14612592hypothetical protein
LOC_Os07g25540OsAffx.5436.1.S1_at11/117+14617050..14618807expressed protein
LOC_Os07g25550OsAffx.27789.3.S1_s_at11/117+14639926..14644366hypothetical protein
LOC_Os07g25550OsAffx.27789.2.S1_x_at10/117+14639926..14644366hypothetical protein
LOC_Os07g25550OsAffx.27789.1.S1_at1/117+14639926..14644366hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009851biological_processauxin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5436.1.S1_at--665--3991Chr07:14618005..14618184 (25 bp)
CGTCCGGGACTCGAAGGTGCACGTC
LOC_Os07g25540
OsAffx.5436.1.S1_at--864--991Chr07:14617899..14617923 (25 bp)
AGGATCCTGGTCGTCCTGGCATGGC
LOC_Os07g25540
OsAffx.5436.1.S1_at--103--2811Chr07:14617854..14617878 (25 bp)
AAGATCGGCATCACCAGGCCATCCA
LOC_Os07g25540
OsAffx.5436.1.S1_at--778--9411Chr07:14617739..14617763 (25 bp)
TCGTGCCCGGGATCAGGAGGCTCCT
LOC_Os07g25540
OsAffx.5436.1.S1_at--32--9931Chr07:14617661..14617685 (25 bp)
TACTGGCCACCGGATACCAAAGCAA
LOC_Os07g25540
OsAffx.5436.1.S1_at--484--4211Chr07:14617226..14617656 (25 bp)
CCCCAGTGGCTCAAGGGAAGTGACT
LOC_Os07g25540
OsAffx.5436.1.S1_at--86--8211Chr07:14617211..14617235 (25 bp)
GGAAGTGACTTCTTCACACAAGAGG
LOC_Os07g25540
OsAffx.5436.1.S1_at--918--3211Chr07:14617180..14617204 (25 bp)
CAAGGGTGCCATTCCCAGATGGTTG
LOC_Os07g25540
OsAffx.5436.1.S1_at--260--3771Chr07:14617139..14617163 (25 bp)
CTCTACTCTGTTGGCTTCACAAGGA
LOC_Os07g25540
OsAffx.5436.1.S1_at--104--8631Chr07:14617104..14617128 (25 bp)
TGGTGTCTCCTCAGATGCTGTTAAG
LOC_Os07g25540
OsAffx.5436.1.S1_at--524--7911Chr07:14617080..14617104 (25 bp)
GGTTGCACAGGACATTGCCATGGCA
LOC_Os07g25540
Target Sequence 
CGTCCGGGACTCGAAGGTGCACGTCCTGCCGCGGGAGATGCTGGGCGTGGCGACGTTCTCGGTGGCCGTCTTCCTCCTCC
GGTTCCTGCCGCTGTGGGTGGTGGACAGGATCCTGGTCGTCCTGGCATGGCTCTTCCTCGGCGACCTCGCCAAGATCGGC
ATCACCAGGCCATCCAGGGGGCCCCTCGAGCTCAAGAACACCAGGGGGAGGACGCCCGTGCTCGACATCGGCGCGCTCGC
CAGGATCCGCTCCGGCGACATCGAGGTCGTGCCCGGGATCAGGAGGCTCCTCCGCGGCGGCGCCGAGCTCGTCGACGGCC
GCCGCGTCCCGGCCGACGCCGTCATACTGGCCACCGGATACCAAAGCAACGTCCCCCAGTGGCTCAAGGGAAGTGACTTC
TTCACACAAGAGGGGTACCCAAGGGTGCCATTCCCAGATGGTTGGAAGGGGGAGTCAGGGCTCTACTCTGTTGGCTTCAC
AAGGAGAGGCCTCTCTGGTGTCTCCTCAGATGCTGTTAAGGTTGCACAGGACATTGCCATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis