Browse Element(s) Details


Os.54828.1.S1_at

Description gb:AK106850.1
DB_XREF= gi:32992059
TID=Os.54828.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A11, full insert sequence.
FL= gb:AK106850.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1887011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18830OsAffx.10719.2.A1_at11/111+10638081..10639170hypothetical protein
LOC_Os01g18840OsAffx.11101.1.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.1.S1_s_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.2.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18850Os.20756.1.S1_at11/111+10647062..10653535SBP domain containing protein, expressed
LOC_Os01g18860Os.16099.1.S1_at11/111+10654244..10656901S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os01g18870Os.54828.1.S1_at11/111+10661570..10663681Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18880Os.18542.1.S1_at11/111+10671954..10676557membrane associated salt-inducible protein, putative, expressed
LOC_Os01g18890OsAffx.22921.1.S1_x_at11/111+10676266..10678966Peroxidase family protein
LOC_Os01g18900NANA1+10683971..10684267stigma specific peroxidase precursor, putative
LOC_Os01g18910OsAffx.11103.1.S1_x_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18910OsAffx.11103.1.S1_at11/111+10688176..10689272Peroxidase family protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54828.1.S1_at--920--6371Chr01:10662268..10662292 (25 bp)
GATCCGGAGCACGTACATCCAGCGG
LOC_Os01g18870
Os.54828.1.S1_at--892--5171Chr01:10662098..10662122 (25 bp)
GCAAGATCGGCGACTGCCACATCTA
LOC_Os01g18870
Os.54828.1.S1_at--911--4391Chr01:10662083..10662107 (25 bp)
GCCACATCTACATGTTCAACACCAA
LOC_Os01g18870
Os.54828.1.S1_at--26--9711Chr01:10661883..10662092 (25 bp)
TCAACACCAAGATTCATTCGGGATC
LOC_Os01g18870
Os.54828.1.S1_at--129--3991Chr01:10661865..10661889 (25 bp)
CGGGATCTCCAGTGTTTGCAAGTGC
LOC_Os01g18870
Os.54828.1.S1_at--102--6311Chr01:10661812..10661836 (25 bp)
GATGAGTACTAACTAGCTCGAGCTA
LOC_Os01g18870
Os.54828.1.S1_at--174--4831Chr01:10661791..10661815 (25 bp)
GCTAGCTAATTAGCCGACCGACCGA
LOC_Os01g18870
Os.54828.1.S1_at--443--2331Chr01:10661755..10661779 (25 bp)
AAAGTTTCTATGTTGCTAGCTAGCT
LOC_Os01g18870
Os.54828.1.S1_at--775--6071Chr01:10661706..10661730 (25 bp)
GAGTAGCTCTTTAATTAATTTCCTT
LOC_Os01g18870
Os.54828.1.S1_at--1037--2751Chr01:10661650..10661674 (25 bp)
AAGACTCGTGTTAGCTTTTGGGAGA
LOC_Os01g18870
Os.54828.1.S1_at--614--4891Chr01:10661637..10661661 (25 bp)
GCTTTTGGGAGATCTTTGGTATGTC
LOC_Os01g18870
Target Sequence 
GATCCGGAGCACGTACATCCAGCGGCGGAGCAAGGAGACGTTCGTGGACGTGCGGATCGTGGAGGACGACGTGAACATCA
AGCTCACCAAGCGCCGCCGCGACGGCTGTCTCGCCGCCGCGTCGCGCGCGCTGGACGACCTCCGCCTCGACCTCGTCCAC
CTCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAGATTCATTCGGGATCTCCAGTGTTTGCAAG
TGCAGTGGCCAGCAGGCTGATTGAAGTGGTGGATGAGTACTAACTAGCTCGAGCTAGCTAATTAGCCGACCGACCGATCG
ATATGATGAAAGTTTCTATGTTGCTAGCTAGCTAGGGTTCTTGGATGCATGAGTACTGAGTAGCTCTTTAATTAATTTCC
TTTTAATTTTAGACTGTTTAATTTGGATTGGTAAAGACTCGTGTTAGCTTTTGGGAGATCTTTGGTATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis