Browse Element(s) Details


OsAffx.24763.1.S1_at

Description tigr:9630.m04600
TID=OsAffx.24763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4729011/11hypothetical protein
LOC_Os03g489301/11Proteasome subunit beta type 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47280Os.49748.1.S1_at11/112+28857405..28861128growth-regulating factor, putative, expressed
LOC_Os02g47280OsAffx.2987.1.S1_at7/112+28857405..28861128growth-regulating factor, putative, expressed
LOC_Os02g47290OsAffx.24763.1.S1_at11/112+28869364..28870848hypothetical protein
LOC_Os02g47300OsAffx.2988.1.S1_at11/112+28881319..28881959hypothetical protein
LOC_Os02g47310Os.15731.1.S1_at11/112+28888196..28891679Tocopherol O-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47320Os.52590.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320Os.4730.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320OsAffx.24764.1.S1_at10/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47330NANA2+28895716..28896078expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24763.1.S1_at--885--5391Chr02:28869432..28869456 (25 bp)
GAAGCTTCTCGGTGACGTGTTGGCA
LOC_Os02g47290
OsAffx.24763.1.S1_at--530--10591Chr02:28869437..28869461 (25 bp)
TTCTCGGTGACGTGTTGGCACATCA
LOC_Os02g47290
OsAffx.24763.1.S1_at--540--7371Chr02:28869443..28869467 (25 bp)
GTGACGTGTTGGCACATCAGATCCC
LOC_Os02g47290
OsAffx.24763.1.S1_at--1135--391Chr02:28869458..28869482 (25 bp)
ATCAGATCCCCACCATAGCGTCGGT
LOC_Os02g47290
OsAffx.24763.1.S1_at--1156--294Chr12:20026293..20026315 (23 bp)
ATAGCGTCGGTCATCGGTTCAGAAT
NONE
OsAffx.24763.1.S1_at--1048--4015Chr12:20026295..20026319 (25 bp)
CGTCGGTCATCGGTTCAGAATCTAG
NONE
OsAffx.24763.1.S1_at--454--7815Chr12:20026299..20026323 (25 bp)
GGTCATCGGTTCAGAATCTAGCCCC
NONE
OsAffx.24763.1.S1_at--4--6073Chr02:28869507..28869531 (25 bp)
GAGTTCGCAACCTCCATTGCAGCGA
LOC_Os02g47290
OsAffx.24763.1.S1_at--991--3812Chr02:28869518..28869542 (25 bp)
CTCCATTGCAGCGAGGTGGCGAGAA
LOC_Os02g47290
OsAffx.24763.1.S1_at--544--1451Chr02:28869539..28869563 (25 bp)
AGAAGCAGCACGTGATGGCCTCATC
LOC_Os02g47290
OsAffx.24763.1.S1_at--815--5052Chr02:28869543..28869567 (25 bp)
GCAGCACGTGATGGCCTCATCTTGT
LOC_Os02g47290
Target Sequence 
GAAGCTTCTCGGTGACGTGTTGGCACATCAGATCCCCACCATAGCGTCGGTCATCGGTTCAGAATCTAGCCCCCCGAGTT
CGCAACCTCCATTGCAGCGAGGTGGCGAGAAGCAGCACGTGATGGCCTCATCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis