Browse Element(s) Details


OsAffx.2987.1.S1_at

Description tigr:9630.m04599
TID=OsAffx.2987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At3g52910
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g472807/11growth-regulating factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47260NANA2+28832951..28836242transposon protein, putative, unclassified
LOC_Os02g47270OsAffx.20387.1.S1_x_at1/112+28838828..28843028transposon protein, putative, unclassified
LOC_Os02g47280Os.49748.1.S1_at11/112+28857405..28861128growth-regulating factor, putative, expressed
LOC_Os02g47280OsAffx.2987.1.S1_at7/112+28857405..28861128growth-regulating factor, putative, expressed
LOC_Os02g47290OsAffx.24763.1.S1_at11/112+28869364..28870848hypothetical protein
LOC_Os02g47300OsAffx.2988.1.S1_at11/112+28881319..28881959hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2987.1.S1_at--983--5511Chr02:28858241..28858261 (21 bp)
GAAAAGGTACATGCCTAGCACTTGC
LOC_Os02g47280
OsAffx.2987.1.S1_at--231--2111Chr02:28858233..28858257 (25 bp)
ACATGCCTAGCACTTGCATTCGTGT
LOC_Os02g47280
OsAffx.2987.1.S1_at--484--2051Chr02:28858222..28858246 (25 bp)
ACTTGCATTCGTGTTTCCTACTAAT
LOC_Os02g47280
OsAffx.2987.1.S1_at--922--10611Chr02:28858215..28858239 (25 bp)
TTCGTGTTTCCTACTAATTCCCAAT
LOC_Os02g47280
OsAffx.2987.1.S1_at--811--2011Chr02:28858203..28858227 (25 bp)
ACTAATTCCCAATCACTGTATCTTC
LOC_Os02g47280
OsAffx.2987.1.S1_at--119--9331Chr02:28858197..28858221 (25 bp)
TCCCAATCACTGTATCTTCTCAAAT
LOC_Os02g47280
OsAffx.2987.1.S1_at--611--3331Chr02:28858190..28858214 (25 bp)
CACTGTATCTTCTCAAATTCAGGTA
LOC_Os02g47280
OsAffx.2987.1.S1_at--264--3791Chr02:28857382..28857782 (25 bp)
CTCGATCAACTAATGCCTCTGCTTG
NONE
OsAffx.2987.1.S1_at--408--9711Chr02:28857377..28857777 (25 bp)
TCAACTAATGCCTCTGCTTGCTATG
NONE
OsAffx.2987.1.S1_at--485--631Chr02:28857355..28857379 (25 bp)
ATGCTCTCCTGTTTGTCGACTCAAC
NONE
OsAffx.2987.1.S1_at--37--10211Chr02:28857344..28857368 (25 bp)
TTTGTCGACTCAACAGTGCCGTCAA
NONE
Target Sequence 
GAAAAGGTACATGCCTAGCACTTGCATTCGTGTTTCCTACTAATTCCCAATCACTGTATCTTCTCAAATTCAGGTATACT
GCTTATGGCACAAGATCTTTGGCGGATGAGCAGAGTCAACTCATTACTGAAGCTATCAACACATCTATTGAAAATCCATG
GCGGCTGCTGCCATCTCAGAACTCGCCATTTCCCCTTTCAAGCTATTCTCAGCTGGGGGCACTAAGTGACCTTGGTCAGA
ACACCCCCAGCTCACTTTCAAAGGTTCAGAGGCAGCCACTTTCGTTCTTTGGGAACGACTATGCGGCTGTCGATTCTGTG
AAGCAAGAGAACCAGACGCTGCGTCCCTTCTTTGATGAGTGGCCAAAGGGAAGGGATTCATGGTCAGACCTCGCTGATGA
GAATGCTAATCTTTCGTCATTCTCAGGCACCCAACTGTCGATCTCCATACCAATGGCATCCTCTGACTTCTCGGCGGCCA
GTTCTCGATCAACTAATGCCTCTGCTTGCTATGCTCTCCTGTTTGTCGACTCAACAGTGCCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis