Browse Element(s) Details


Os.49748.1.S1_at

Description gb:AK063983.1
DB_XREF= gi:32974001
TID=Os.49748.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D07, full insert sequence.
FL= gb:AK063983.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4728011/11growth-regulating factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47260NANA2+28832951..28836242transposon protein, putative, unclassified
LOC_Os02g47270OsAffx.20387.1.S1_x_at1/112+28838828..28843028transposon protein, putative, unclassified
LOC_Os02g47280Os.49748.1.S1_at11/112+28857405..28861128growth-regulating factor, putative, expressed
LOC_Os02g47280OsAffx.2987.1.S1_at7/112+28857405..28861128growth-regulating factor, putative, expressed
LOC_Os02g47290OsAffx.24763.1.S1_at11/112+28869364..28870848hypothetical protein
LOC_Os02g47300OsAffx.2988.1.S1_at11/112+28881319..28881959hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49748.1.S1_at--552--2971Chr02:28857643..28857664 (22 bp)
AATGGTGACTGAATGCTGCGTGGAT
LOC_Os02g47280
Os.49748.1.S1_at--400--6371Chr02:28857615..28857639 (25 bp)
GATCCTGCTGCCCAGTGAACTCATA
LOC_Os02g47280
Os.49748.1.S1_at--1016--8971Chr02:28857600..28857624 (25 bp)
TGAACTCATACTGGCCTTGTTGCTG
LOC_Os02g47280
Os.49748.1.S1_at--1123--6671Chr02:28857582..28857606 (25 bp)
GTTGCTGTCTTGCTCTGCGATTTTC
LOC_Os02g47280
Os.49748.1.S1_at--104--4571Chr02:28857548..28857572 (25 bp)
GCGCCCACCGTACGATAGTAGCAAA
LOC_Os02g47280
Os.49748.1.S1_at--16--8751Chr02:28857509..28857533 (25 bp)
TGTAATTTACCAGTGTTCCCCTGTC
LOC_Os02g47280
Os.49748.1.S1_at--924--10651Chr02:28857494..28857518 (25 bp)
TTCCCCTGTCAGATTTGCGTGTGAA
LOC_Os02g47280
Os.49748.1.S1_at--298--5591Chr02:28857472..28857496 (25 bp)
GAAATCGATCAAACTCCGTGGTCTC
LOC_Os02g47280
Os.49748.1.S1_at--854--1991Chr02:28857460..28857484 (25 bp)
ACTCCGTGGTCTCCTTTGGACGAAG
LOC_Os02g47280
Os.49748.1.S1_at--355--7651Chr02:28857436..28857460 (25 bp)
GGGAGATGTCAACGTTTTCCTTGAT
LOC_Os02g47280
Os.49748.1.S1_at--373--6811Chr02:28857423..28857447 (25 bp)
GTTTTCCTTGATGTTTACTGCTAGT
LOC_Os02g47280
Target Sequence 
AATGGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACTGGCCTTGTTGCTGTCTTGCTCTGCG
ATTTTCTGCCTGCTCGCGCCCACCGTACGATAGTAGCAAAACATTCTATGCTTCTGTAATTTACCAGTGTTCCCCTGTCA
GATTTGCGTGTGAAATCGATCAAACTCCGTGGTCTCCTTTGGACGAAGGGAGATGTCAACGTTTTCCTTGATGTTTACTG
CTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis