Browse Element(s) Details


OsAffx.24121.3.S1_at

Description tigr:9630.m00538
TID=OsAffx.24121.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g360004/11retrotransposon protein, putative, unclassified
LOC_Os06g443402/11retrotransposon protein, putative, unclassified
LOC_Os02g061002/11hypothetical protein
LOC_Os06g312601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35950OsAffx.29246.1.S1_x_at6/113+19901971..19902842expressed protein
LOC_Os03g35950Os.46610.1.A1_x_at1/113+19901971..19902842expressed protein
LOC_Os03g35960OsAffx.25371.1.S1_at8/113+19904268..19904606hypothetical protein
LOC_Os03g35970Os.26535.1.S1_x_at4/113+19905897..19910473hypothetical protein
LOC_Os03g35970Os.26592.3.S1_x_at3/113+19905897..19910473hypothetical protein
LOC_Os03g35970Os.27520.8.S1_x_at2/113+19905897..19910473hypothetical protein
LOC_Os03g35970OsAffx.20736.1.S1_at1/113+19905897..19910473hypothetical protein
LOC_Os03g35980OsAffx.25373.1.S1_at11/113+19912168..19913256hypothetical protein
LOC_Os03g35980OsAffx.25373.1.S1_x_at11/113+19912168..19913256hypothetical protein
LOC_Os03g35990Os.54774.1.S1_at2/113+19917285..19921229retrotransposon, putative, centromere-specific
LOC_Os03g35990Os.54774.1.S1_x_at2/113+19917285..19921229retrotransposon, putative, centromere-specific
LOC_Os03g36000OsAffx.24121.1.S1_at11/113+19923588..19928036retrotransposon protein, putative, unclassified
LOC_Os03g36000OsAffx.24121.3.S1_at4/113+19923588..19928036retrotransposon protein, putative, unclassified
LOC_Os03g36020NANA3+19934577..19935700retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36030Os.27691.1.S1_x_at1/113+19935950..19940493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36050OsAffx.3613.1.S1_x_at1/113+19949947..19954992retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24121.3.S1_at--592--2431NONE
AAAATGGGCCGCACCCGTCGGCATC
NONE
OsAffx.24121.3.S1_at--1115--3631Chr02:3042435..3042459 (25 bp)
CTTCCTCTTCGCTCGGGAAGAAGAG
NONE
OsAffx.24121.3.S1_at--862--9454Chr06:26772123..26772147 (25 bp)
TCAGAACGGTTGGAAGAAACCTCCT
LOC_Os06g44340
OsAffx.24121.3.S1_at--419--5553Chr06:26772138..26772162 (25 bp)
GAAACCTCCTGAAGGAATGCTAATG
LOC_Os06g44340
OsAffx.24121.3.S1_at--1113--6451Chr02:3041298..3041322 (25 bp)
GATCAATGTTGATGCTGCTTTCGAT
NONE
OsAffx.24121.3.S1_at--795--6651Chr02:3041291..3041315 (25 bp)
GTTGATGCTGCTTTCGATATTGATT
NONE
OsAffx.24121.3.S1_at--356--4771Chr02:3041285..3041309 (25 bp)
GCTGCTTTCGATATTGATTCGGGAA
NONE
OsAffx.24121.3.S1_at--357--3611Chr02:3041221..3041245 (25 bp)
CTTGTGTTACGGCTTCTCAAGCATT
NONE
OsAffx.24121.3.S1_at--979--8751Chr02:3041217..3041241 (25 bp)
TGTTACGGCTTCTCAAGCATTTCTT
NONE
OsAffx.24121.3.S1_at--675--9613Chr06:26772513..26772537 (25 bp)
TCATGAACTGGCCAGGTTAGCGTTT
NONE
OsAffx.24121.3.S1_at--57--3914Chr06:26772520..26772544 (25 bp)
CTGGCCAGGTTAGCGTTTAGGACAA
NONE
Target Sequence 
AAAATGGGCCGCACCCGTCGGCATCTCGGCTCCTTGCCCTTCCTCTTCGCTCGGGAAGAAGAGGAGCCGACAGCGGAGAA
GAGGGGCAGAGGTAAAACAAAAATTCAGAACGGTTGGAAGAAACCTCCTGAAGGAATGCTAATGATCAATGTTGATGCTG
CTTTCGATATTGATTCGGGAAGTGGAGGTACTGGGGTGGTGTTGAGAGATCACTTGGGAGCTTGTGTTACGGCTTCTCAA
GCATTTCTTCCATATGTCCTTGATGCACCGACGATGGCGGAGGCTTTTGCGCTGAGAGATGGGCTGGCCCTGGCGCAACA
CATTGGTGCTAAAAATGTTATAGTACAAACTGATTGTATGCAGGTGGTTTCAACGATGATGGATGGAGGATTTTCTGCTA
CAGCGGCTATGTCTGTGTTTGATGATTGCAAGCTGATGTGGGATGGTTTTGGTACAATTTCTATTGAGCACTGTAATAGA
AATTCCAATCAGATGGCTCATGAACTGGCCAGGTTAGCGTTTAGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24121.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis