Browse Element(s) Details


OsAffx.29246.1.S1_x_at

Description tigr:9636.m01726
TID=OsAffx.29246.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1715011/11expressed protein
LOC_Os03g359506/11expressed protein
LOC_Os05g080603/11hypothetical protein
LOC_Os02g297002/11retrotransposon protein, putative, unclassified
LOC_Os11g307501/11hypothetical protein
LOC_Os04g210501/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17120NANA8+10471520..10473684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17130Os.6031.1.S1_at1/118+10476686..10483964transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17140Os.49896.1.S1_at11/118+10485298..10487937retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17150OsAffx.29246.1.S1_x_at11/118+10497396..10497930expressed protein
LOC_Os08g17160Os.49534.1.S1_at11/118+10501794..10502892Plastocyanin-like domain containing protein, expressed
LOC_Os08g17160Os.49534.1.S1_x_at11/118+10501794..10502892Plastocyanin-like domain containing protein, expressed
LOC_Os08g17170NANA8+10511084..10516281retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17180Os.45161.1.A1_x_at1/118+10520727..10522688retrotransposon protein, putative, unclassified
LOC_Os08g17180OsAffx.16451.1.A1_x_at1/118+10520727..10522688retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29246.1.S1_x_at--387--8372Chr08:10497640..10497664 (25 bp)
GGCGTTTCGGCGACCTTCGGCGACA
LOC_Os08g17150
OsAffx.29246.1.S1_x_at--1071--6813Chr08:10497643..10497667 (25 bp)
GTTTCGGCGACCTTCGGCGACAATG
LOC_Os08g17150
OsAffx.29246.1.S1_x_at--289--3631Chr08:10497654..10497678 (25 bp)
CTTCGGCGACAATGGAAGGGTGGCC
LOC_Os08g17150
OsAffx.29246.1.S1_x_at--882--91322Chr11:27035243..27035338 (25 bp)
TGCGAATCCAATGGACTTCGGGTTG
NONE
OsAffx.29246.1.S1_x_at--483--45919Chr11:27035244..27035339 (25 bp)
GCGAATCCAATGGACTTCGGGTTGA
NONE
OsAffx.29246.1.S1_x_at--935--41112Chr11:27035245..27035339 (24 bp)
CGAATCCAATGGACTTCGGGTTGAT
NONE
OsAffx.29246.1.S1_x_at--804--5234Chr08:10497699..10497723 (25 bp)
GAATCCAATGGACTTCGGGTTGATG
LOC_Os08g17150
OsAffx.29246.1.S1_x_at--659--3034Chr08:10497700..10497724 (25 bp)
AATCCAATGGACTTCGGGTTGATGG
LOC_Os08g17150
OsAffx.29246.1.S1_x_at--597--575Chr08:10497701..10497725 (25 bp)
ATCCAATGGACTTCGGGTTGATGGC
LOC_Os08g17150
OsAffx.29246.1.S1_x_at--786--9451Chr08:10497748..10497772 (25 bp)
TCGGCGCAAGGGAACCAGCTGCTGG
LOC_Os08g17150
OsAffx.29246.1.S1_x_at--567--5431Chr08:10497759..10497783 (25 bp)
GAACCAGCTGCTGGGCTTGCTCTTG
LOC_Os08g17150
Target Sequence 
GGCGTTTCGGCGACCTTCGGCGACAATGGAAGGGTGGCCGGGCTTCACTTCGCAGCTGCGAATCCAATGGACTTCGGGTT
GATGGCGACGACGGGCTTCCCGGGGTCTTCGGCGCAAGGGAACCAGCTGCTGGGCTTGCTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29246.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis