Browse Element(s) Details


Os.49534.1.S1_at

Description gb:AK109468.1
DB_XREF= gi:32994677
TID=Os.49534.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C06, full insert sequence.
FL= gb:AK109468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1716011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17130Os.6031.1.S1_at1/118+10476686..10483964transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17140Os.49896.1.S1_at11/118+10485298..10487937retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17150OsAffx.29246.1.S1_x_at11/118+10497396..10497930expressed protein
LOC_Os08g17160Os.49534.1.S1_at11/118+10501794..10502892Plastocyanin-like domain containing protein, expressed
LOC_Os08g17160Os.49534.1.S1_x_at11/118+10501794..10502892Plastocyanin-like domain containing protein, expressed
LOC_Os08g17170NANA8+10511084..10516281retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17180Os.45161.1.A1_x_at1/118+10520727..10522688retrotransposon protein, putative, unclassified
LOC_Os08g17180OsAffx.16451.1.A1_x_at1/118+10520727..10522688retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49534.1.S1_at--1047--9391Chr08:10502343..10502367 (25 bp)
TCGTCATGTCGGAGAAGCACAGCCG
LOC_Os08g17160
Os.49534.1.S1_at--159--9631Chr08:10502346..10502370 (25 bp)
TCATGTCGGAGAAGCACAGCCGCCG
LOC_Os08g17160
Os.49534.1.S1_at--797--10494Chr08:10502705..10502729 (25 bp)
TTAACGATTTGCCACTAAGCCCACG
LOC_Os08g17160
Os.49534.1.S1_at--513--6531Chr08:10502710..10502734 (25 bp)
GATTTGCCACTAAGCCCACGTGTCA
LOC_Os08g17160
Os.49534.1.S1_at--441--9191Chr08:10502714..10502738 (25 bp)
TGCCACTAAGCCCACGTGTCATAAA
LOC_Os08g17160
Os.49534.1.S1_at--923--9791Chr08:10502720..10502744 (25 bp)
TAAGCCCACGTGTCATAAACACATG
LOC_Os08g17160
Os.49534.1.S1_at--1075--3954Chr09:13516166..13516188 (23 bp)
CGTGTCATAAACACATGAGGGCCCA
NONE
Os.49534.1.S1_at--1096--8932Chr08:10502761..10502785 (25 bp)
TGACAAGGTGTGGTAAATCGTTAAT
LOC_Os08g17160
Os.49534.1.S1_at--555--7833Chr08:10502772..10502796 (25 bp)
GGTAAATCGTTAATTGACATGTCAC
LOC_Os08g17160
Os.49534.1.S1_at--1--10757Chr08:10502785..10502809 (25 bp)
TTGACATGTCACAAGAGTGGCAAAT
LOC_Os08g17160
Os.49534.1.S1_at--563--9591Chr08:10502809..10502833 (25 bp)
TAGTTAAATTTCCCGTAGAAGAATG
LOC_Os08g17160
Target Sequence 
TCGTCATGTCGGAGAAGCACAGCCGCCGCGGCCAGGGGTTCTTCGCGCCCGTGCCGGCCCCCGCGCAGTCCCCGCTGGCC
GCCGGCCTCTTCCAGGCCCCCGCCCCAGCGCCGGCGACTGGGAACGCCGGGAGGACCGCGGCGAGCGGCGCCGTGCTCGT
TGCCGCCGCCCTCCTCGGCGCGGCGGTGGCCGGGTTCTGAGAAGATGGCGTTCGCTTGGGGCTTTAGGAACTTGGGGGGA
GGATTTGGGGATTCTTTGATTTTGTCTAGATTTGGTTGCTGTATGAGAGCTCAAGAAGAAAGTGCTTCTTCTGTCTGTAG
AAGAAGGGGCTTTTAACTATTTACCACTCTTACGAGTGGTGCTTAACGATTTGCCACTAAGCCCACGTGTCATAAACACA
TGAGGGCCCACATGTCATTGACAAGGTGTGGTAAATCGTTAATTGACATGTCACAAGAGTGGCAAATAGTTAAATTTCCC
GTAGAAGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis