Browse Element(s) Details


OsAffx.27014.1.S1_at

Description tigr:9633.m02321
TID=OsAffx.27014.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2576011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25720OsAffx.31069.3.S1_at11/115+14882761..14885793hypothetical protein
LOC_Os05g25720OsAffx.31069.2.S1_x_at1/115+14882761..14885793hypothetical protein
LOC_Os05g25740OsAffx.31869.1.S1_at9/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.5.S1_x_at7/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.2.S1_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.3.S1_s_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.4.S1_x_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25750OsAffx.21161.1.S1_at1/115+14900481..14905053retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25760OsAffx.27014.1.S1_at11/115+14909678..14911343hypothetical protein
LOC_Os05g25760OsAffx.25373.1.S1_x_at1/115+14909678..14911343hypothetical protein
LOC_Os05g25770Os.37565.1.S1_at11/115+14913495..14915716WRKY DNA binding domain containing protein, expressed
LOC_Os05g25770Os.37565.2.S1_at11/115+14913495..14915716WRKY DNA binding domain containing protein, expressed
LOC_Os05g25770Os.37565.1.S1_x_at11/115+14913495..14915716WRKY DNA binding domain containing protein, expressed
LOC_Os05g25780Os.27075.1.S1_at11/115+14919775..14922684rhodanese-like domain-containing protein, putative, expressed
LOC_Os05g25790OsAffx.24317.5.S1_x_at3/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25790OsAffx.24317.6.S1_x_at3/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25790OsAffx.24317.3.S1_at1/115+14928597..14937717transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27014.1.S1_at--76--8411Chr05:14909738..14910133 (25 bp)
GGCCACCCACCGGTGGAATGGATAA
LOC_Os05g25760
OsAffx.27014.1.S1_at--143--8192Chr05:14910149..14910173 (25 bp)
GGAACCAGACCAAGCCTGAAGGCCG
LOC_Os05g25760
OsAffx.27014.1.S1_at--1091--1372Chr05:14910155..14910179 (25 bp)
AGACCAAGCCTGAAGGCCGCCTGGC
LOC_Os05g25760
OsAffx.27014.1.S1_at--985--8611Chr05:14910203..14910227 (25 bp)
TGGTGATCACCGTCCGATTCAAGGT
LOC_Os05g25760
OsAffx.27014.1.S1_at--707--4111Chr05:14910212..14910709 (25 bp)
CCGTCCGATTCAAGGTTTGTAGGTG
LOC_Os05g25760
OsAffx.27014.1.S1_at--392--8715Chr06:19970353..19970828 (25 bp)
TGTCCGGTGCTACATCGGTATTTTC
NONE
OsAffx.27014.1.S1_at--431--9791Chr05:14911034..14911058 (25 bp)
TAAGAAATATCAACAGCCACGACGA
LOC_Os05g25760
OsAffx.27014.1.S1_at--59--1891Chr05:14911243..14911267 (25 bp)
ACGATGATGGCTACCGCGACAACGA
LOC_Os05g25760
OsAffx.27014.1.S1_at--462--4091Chr05:14911265..14911289 (25 bp)
CGACGACTGGGCTACTTGTTGGTGT
LOC_Os05g25760
OsAffx.27014.1.S1_at--552--5731Chr05:14911269..14911293 (25 bp)
GACTGGGCTACTTGTTGGTGTGAAA
LOC_Os05g25760
OsAffx.27014.1.S1_at--998--10751Chr05:14911280..14911304 (25 bp)
TTGTTGGTGTGAAAACACGACGGCC
LOC_Os05g25760
Target Sequence 
GGCCACCCACCGGTGGAATGGATAAGGCAGGCTAAGGAGGGGAACCAGACCAAGCCTGAAGGCCGCCTGGCCCAGCCCAA
GTTTGGCCGAACCCTGGTGATCACCGTCCGATTCAAGGTTTGTAGGTGTGAGGTGGGTGTAGAGGTGGTGACAGCCCTCA
AGATCACTGAAGTCCTCCCTGTCCGGTGCTACATCGGTATTTTCCGTGCGCTTGCGGATTTTATCTGTAAAGTTAAGAAA
TATCAACAGCCACGACGACGGGGTGGCTGGATCCGCCGCCGCGACGACGGGGTGGCTGGATCTGCTGCCGCGACGACGGG
GAAGGCTAGCGGGGAGGGCAGCGAAGGTGGTGAGAGGGTTGGGGCAGATCCAGCAGCGAGCGGTGCTCGGGCGGTCCTCC
ACGGTGGTGAAGGAGGTGGATCCAGCGGCGGCTGCCATGACGACGATGATGGCTACCGCGACAACGACGACTGGGCTACT
TGTTGGTGTGAAAACACGACGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis