Browse Element(s) Details


Os.37565.2.S1_at

Description gb:AK066255.1
DB_XREF= gi:32976273
TID=Os.37565.2
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058O04, full insert sequence.
FL= gb:AK105939.1 gb:AK103959.1 gb:AK066255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2577011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25740OsAffx.31869.1.S1_at9/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.5.S1_x_at7/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.2.S1_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.3.S1_s_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.4.S1_x_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25750OsAffx.21161.1.S1_at1/115+14900481..14905053retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25760OsAffx.27014.1.S1_at11/115+14909678..14911343hypothetical protein
LOC_Os05g25760OsAffx.25373.1.S1_x_at1/115+14909678..14911343hypothetical protein
LOC_Os05g25770Os.37565.1.S1_at11/115+14913495..14915716WRKY DNA binding domain containing protein, expressed
LOC_Os05g25770Os.37565.2.S1_at11/115+14913495..14915716WRKY DNA binding domain containing protein, expressed
LOC_Os05g25770Os.37565.1.S1_x_at11/115+14913495..14915716WRKY DNA binding domain containing protein, expressed
LOC_Os05g25780Os.27075.1.S1_at11/115+14919775..14922684rhodanese-like domain-containing protein, putative, expressed
LOC_Os05g25790OsAffx.24317.5.S1_x_at3/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25790OsAffx.24317.6.S1_x_at3/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25790OsAffx.24317.3.S1_at1/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25800OsAffx.27015.2.S1_at11/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.2.S1_x_at11/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.1.S1_at10/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.1.S1_x_at9/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.24317.3.S1_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800Os.53746.1.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.24317.5.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.31512.1.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37565.2.S1_at--288--6411Chr05:14915251..14915275 (25 bp)
GATCTGGACGACATTATGGGTTTGA
LOC_Os05g25770
Os.37565.2.S1_at--169--7871Chr05:14915269..14915293 (25 bp)
GGTTTGAGCTTTTGATCACCGAAGA
LOC_Os05g25770
Os.37565.2.S1_at--154--2731Chr05:14915290..14915314 (25 bp)
AAGAATCATGGATGGACACGGGCCG
LOC_Os05g25770
Os.37565.2.S1_at--662--2791Chr05:14915332..14915356 (25 bp)
AAGATGGATTCCACGCGTGTGTACA
LOC_Os05g25770
Os.37565.2.S1_at--69--2811Chr05:14915399..14915423 (25 bp)
AAGATACTCCTAATTAGCCTGGCTA
LOC_Os05g25770
Os.37565.2.S1_at--839--8871Chr05:14915446..14915470 (25 bp)
TGATGTGTCGTCTCAGCTTTAAGCT
LOC_Os05g25770
Os.37565.2.S1_at--1044--2071Chr05:14915621..14915645 (25 bp)
ACATATAGCTTCACGTGCCTAATCC
LOC_Os05g25770
Os.37565.2.S1_at--846--7271Chr05:14915635..14915659 (25 bp)
GTGCCTAATCCTCTGCTAAATGTTG
LOC_Os05g25770
Os.37565.2.S1_at--585--3871Chr05:14915668..14915692 (25 bp)
CTGTAGAAAGATTCGCCATTTGGCT
LOC_Os05g25770
Os.37565.2.S1_at--649--4431Chr05:14915682..14915706 (25 bp)
GCCATTTGGCTACGACTTTACTGTA
LOC_Os05g25770
Os.37565.2.S1_at--48--9851Chr05:14915692..14915716 (25 bp)
TACGACTTTACTGTACATGCCGTTC
LOC_Os05g25770
Target Sequence 
GATCTGGACGACATTATGGGTTTGAGCTTTTGATCACCGAAGAATCATGGATGGACACGGGCCGGGTAAAACGATCGAAA
GAAGATGGATTCCACGCGTGTGTACAGAAATAATTAGCGGCAGCGCGGATCTTAATTTGGAACTTGCAAAGATACTCCTA
ATTAGCCTGGCTAGATTAGTTTGTAAATTCCTTGTTGATGTGTCGTCTCAGCTTTAAGCTGCAGACATGCTAGCAAGTAN
CAACACGATTAGTACGTAGTAATGTGGTTCNTGATTATGAGCTGGGGGTCTTAACCTTTTTTGTGTGACAAGCAAGAGAA
GAGGATTTGGGTACAATGTAATCCTGTTCTTCCGCTTTCGAAAAAAAAAAACATATAGCTTCACGTGCCTAATCCTCTGC
TAAATGTTGTGCCATAACTGTAGAAAGATTCGCCATTTGGCTACGACTTTACTGTACATGCCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37565.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis