Browse Element(s) Details


Os.27075.1.S1_at

Description gb:AK109472.1
DB_XREF= gi:32994681
TID=Os.27075.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-E12, full insert sequence.
FL= gb:AK109472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2578011/11rhodanese-like domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25740OsAffx.31869.1.S1_at9/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.5.S1_x_at7/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.2.S1_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.3.S1_s_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.4.S1_x_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25750OsAffx.21161.1.S1_at1/115+14900481..14905053retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25760OsAffx.27014.1.S1_at11/115+14909678..14911343hypothetical protein
LOC_Os05g25760OsAffx.25373.1.S1_x_at1/115+14909678..14911343hypothetical protein
LOC_Os05g25770Os.37565.1.S1_at11/115+14913495..14915716WRKY DNA binding domain containing protein, expressed
LOC_Os05g25770Os.37565.2.S1_at11/115+14913495..14915716WRKY DNA binding domain containing protein, expressed
LOC_Os05g25770Os.37565.1.S1_x_at11/115+14913495..14915716WRKY DNA binding domain containing protein, expressed
LOC_Os05g25780Os.27075.1.S1_at11/115+14919775..14922684rhodanese-like domain-containing protein, putative, expressed
LOC_Os05g25790OsAffx.24317.5.S1_x_at3/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25790OsAffx.24317.6.S1_x_at3/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25790OsAffx.24317.3.S1_at1/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25800OsAffx.27015.2.S1_at11/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.2.S1_x_at11/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.1.S1_at10/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.1.S1_x_at9/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.24317.3.S1_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800Os.53746.1.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.24317.5.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.31512.1.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25810OsAffx.27016.1.S1_at10/115+14946952..14948280hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27075.1.S1_at--1054--9511Chr05:14922098..14922122 (25 bp)
TCTCAGTGGAGCACGGATTAGCCCA
LOC_Os05g25780
Os.27075.1.S1_at--813--411Chr05:14922204..14922228 (25 bp)
ATCATGTCCATATTGCTTTGCAACC
LOC_Os05g25780
Os.27075.1.S1_at--55--3291Chr05:14922357..14922381 (25 bp)
CAAACAGTTGTCGAGCTCAGTCTAA
LOC_Os05g25780
Os.27075.1.S1_at--924--2391Chr05:14922399..14922423 (25 bp)
AAACTTGTTCCATTACCACTTCTGA
LOC_Os05g25780
Os.27075.1.S1_at--552--6531Chr05:14922426..14922450 (25 bp)
GATTGACGTTTTGCTGACGAAGCGA
LOC_Os05g25780
Os.27075.1.S1_at--523--6131Chr05:14922449..14922473 (25 bp)
GAGGGATCCTTTTGTATCAGCCGCG
LOC_Os05g25780
Os.27075.1.S1_at--998--5071Chr05:14922483..14922507 (25 bp)
GCACCTTTCTTGTAGTCTTCCAGAT
LOC_Os05g25780
Os.27075.1.S1_at--160--10691Chr05:14922500..14922524 (25 bp)
TTCCAGATTATGTCTTGGTCCCTTA
LOC_Os05g25780
Os.27075.1.S1_at--862--7791Chr05:14922516..14922540 (25 bp)
GGTCCCTTATGTAGCCTTACGATAA
LOC_Os05g25780
Os.27075.1.S1_at--197--8991Chr05:14922545..14922569 (25 bp)
TGAAGTTGTTTTTCGGTAGCACCGT
LOC_Os05g25780
Os.27075.1.S1_at--1027--6951Chr05:14922560..14922584 (25 bp)
GTAGCACCGTTGTTTGTTCCATCTG
LOC_Os05g25780
Target Sequence 
TCTCAGTGGAGCACGGATTAGCCCAAGGNACCCACAAANTTTGTTATGGATGTAAGAAACCAGTTAGTGATGAAGACATG
GAATCTCCTGAGTGGGAGTATGGTGTATCATGTCCATATTGCTTTGCAACCAAATCCGAGGAGGAGAAGGAAAGGGCAAG
GGCACGGCAGAGACAGTTTGAGACATGGGGAGTTATTGGCGGCCCTGATAAAGGAAGAAGTCCAAAAAGGNTGGAAGNTA
ATCACACAGCTGAAGAGCCCAAACAGTTGTCGAGCTCAGTCTAACTCAAACTGGGTAACTGAAACTTGTTCCATTACCAC
TTCTGATTGATTGACGTTTTGCTGACGAAGCGAGGGATCCTTTTGTATCAGCCGCGTNTTNTTTTGCACCTTTCTTGTAG
TCTTCCAGATTATGTCTTGGTCCCTTATGTAGCCTTACGATAAAGCTTGAAGTTGTTTTTCGGTAGCACCGTTGTTTGTT
CCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis