Browse Element(s) Details


OsAffx.27016.1.S1_at

Description tigr:9633.m02326
TID=OsAffx.27016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2581010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25780Os.27075.1.S1_at11/115+14919775..14922684rhodanese-like domain-containing protein, putative, expressed
LOC_Os05g25790OsAffx.24317.5.S1_x_at3/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25790OsAffx.24317.6.S1_x_at3/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25790OsAffx.24317.3.S1_at1/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25800OsAffx.27015.2.S1_at11/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.2.S1_x_at11/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.1.S1_at10/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.1.S1_x_at9/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.24317.3.S1_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800Os.53746.1.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.24317.5.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.31512.1.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25810OsAffx.27016.1.S1_at10/115+14946952..14948280hypothetical protein
LOC_Os05g25820NANA5+14952402..14953457retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g25830OsAffx.4431.1.S1_x_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25830OsAffx.4431.1.S1_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25840Os.7933.1.S1_at11/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25840Os.9363.2.S1_x_at1/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25850Os.4610.1.S1_at11/115+14968666..14973430Superoxide dismutase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27016.1.S1_at--1099--5571Chr05:14948215..14948239 (25 bp)
GACAATGGTTGGAGAGCCCTCGGAA
LOC_Os05g25810
OsAffx.27016.1.S1_at--384--3251Chr05:14948131..14948155 (25 bp)
CAACAAGGGAAGACCAGTTGGTGGT
LOC_Os05g25810
OsAffx.27016.1.S1_at--886--7271NONE
GTGCCGAAGTCTTGTATAGGCTTTT
NONE
OsAffx.27016.1.S1_at--299--6891Chr05:14947069..14947093 (25 bp)
GTATAGGCTTTTGATCGGCGTACCC
LOC_Os05g25810
OsAffx.27016.1.S1_at--802--10351Chr05:14947061..14947085 (25 bp)
TTTTGATCGGCGTACCCTACTGGCG
LOC_Os05g25810
OsAffx.27016.1.S1_at--1104--9951Chr05:14947049..14947073 (25 bp)
TACCCTACTGGCGTGTGGCATTGAT
LOC_Os05g25810
OsAffx.27016.1.S1_at--1098--4291Chr05:14947046..14947070 (25 bp)
CCTACTGGCGTGTGGCATTGATGAT
LOC_Os05g25810
OsAffx.27016.1.S1_at--595--6591Chr05:14947024..14947048 (25 bp)
GATTGATGAAAAGATCCAGTTCCTT
LOC_Os05g25810
OsAffx.27016.1.S1_at--262--2771Chr05:14947014..14947038 (25 bp)
AAGATCCAGTTCCTTGGAGTTGGAA
LOC_Os05g25810
OsAffx.27016.1.S1_at--656--6611Chr05:14946996..14947020 (25 bp)
GTTGGAACTTGGAATGTCTACTGGA
LOC_Os05g25810
OsAffx.27016.1.S1_at--730--8711Chr05:14946982..14947006 (25 bp)
TGTCTACTGGAGACTCTTAACTACT
LOC_Os05g25810
Target Sequence 
GACAATGGTTGGAGAGCCCTCGGAAGCGACGAGAAGGATGGGATCCCCGCGGGGAGGTGGAGAAGGAGAGGTGGGAGAGG
ATGACAACAAGGGAAGACCAGTTGGTGGTGGTTGGGGAGACAAACGACAACAAAGAGGGGGTGCCGAAGTCTTGTATAGG
CTTTTGATCGGCGTACCCTACTGGCGTGTGGCATTGATGATTGATGAAAAGATCCAGTTCCTTGGAGTTGGAACTTGGAA
TGTCTACTGGAGACTCTTAACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis