Browse Element(s) Details


OsAffx.4431.1.S1_at

Description tigr:9633.m02328
TID=OsAffx.4431.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=57 filaggrin, polyprotein precursor (GB:L01089), 5 end
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2583011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25790OsAffx.24317.5.S1_x_at3/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25790OsAffx.24317.6.S1_x_at3/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25790OsAffx.24317.3.S1_at1/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25800OsAffx.27015.2.S1_at11/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.2.S1_x_at11/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.1.S1_at10/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.1.S1_x_at9/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.24317.3.S1_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800Os.53746.1.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.24317.5.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.31512.1.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25810OsAffx.27016.1.S1_at10/115+14946952..14948280hypothetical protein
LOC_Os05g25820NANA5+14952402..14953457retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g25830OsAffx.4431.1.S1_x_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25830OsAffx.4431.1.S1_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25840Os.7933.1.S1_at11/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25840Os.9363.2.S1_x_at1/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25850Os.4610.1.S1_at11/115+14968666..14973430Superoxide dismutase, mitochondrial precursor, putative, expressed
LOC_Os05g25860Os.53558.1.S1_at11/115+14974311..14976487expressed protein
LOC_Os05g25870Os.50866.1.S1_at11/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25870OsAffx.14833.1.S1_at5/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880Os.55474.1.S1_at11/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880OsAffx.14833.1.S1_at5/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25890Os.52500.1.S1_at11/115+14983404..14988171expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4431.1.S1_at--367--4631Chr05:14958353..14958377 (25 bp)
GCGATCAAAAGAATCGGGTGGCACA
LOC_Os05g25830
OsAffx.4431.1.S1_at--471--3275Chr05:14958348..14958372 (25 bp)
CAAAAGAATCGGGTGGCACAGAGGC
LOC_Os05g25830
OsAffx.4431.1.S1_at--949--21314Chr05:14958300..14958324 (25 bp)
ACAGAGAGCAGCAAGCGATCAGAAT
LOC_Os05g25830
OsAffx.4431.1.S1_at--850--1354Chr05:14958298..14958322 (25 bp)
AGAGAGCAGCAAGCGATCAGAATCA
LOC_Os05g25830
OsAffx.4431.1.S1_at--557--4592Chr05:14958202..14958226 (25 bp)
GCGCAAGCGATCAGACAGCACTGGG
LOC_Os05g25830
OsAffx.4431.1.S1_at--737--3193Chr05:14958089..14958113 (25 bp)
CAATCGGGTGGCACACAGAGAGCAG
LOC_Os05g25830
OsAffx.4431.1.S1_at--92--515Chr05:14958087..14958111 (25 bp)
ATCGGGTGGCACACAGAGAGCAGCA
LOC_Os05g25830
OsAffx.4431.1.S1_at--1131--3974Chr05:14958085..14958109 (25 bp)
CGGGTGGCACACAGAGAGCAGCACA
LOC_Os05g25830
OsAffx.4431.1.S1_at--467--7732Chr05:14958083..14958107 (25 bp)
GGTGGCACACAGAGAGCAGCACAAT
LOC_Os05g25830
OsAffx.4431.1.S1_at--497--8512Chr05:14958081..14958105 (25 bp)
TGGCACACAGAGAGCAGCACAATCG
LOC_Os05g25830
OsAffx.4431.1.S1_at--361--3312Chr05:14958078..14958102 (25 bp)
CACACAGAGAGCAGCACAATCGGGT
LOC_Os05g25830
Target Sequence 
GCGATCAAAAGAATCGGGTGGCACAGAGGCGCAAGCGATCAGAATCAGGGAGAACAGAGAGCAGCAAGCGATCAGAATCA
TCGGGTGGCACAGAGGCGCAAGCGATCAGAATCGGGGAGAACAGAGAGCAGCACAATCGGGTGGCACAGAGGCGCAAGCG
ATCAGACAGCACTGGGGAGATTGTCTGGCACAGAGGCGCAAGCGATCAGAATCGGGTGGCACAGAGGCGCAAGCGATCAG
AATCGGGGAGAACAGAGAGCAGCACAATCGGGTGGCACACAGAGAGCAGCACAATCGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis