Browse Element(s) Details


Os.52500.1.S1_at

Description gb:AK067550.1
DB_XREF= gi:32977568
TID=Os.52500.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108F24, full insert sequence.
FL= gb:AK067550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2589011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25830OsAffx.4431.1.S1_x_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25830OsAffx.4431.1.S1_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25840Os.7933.1.S1_at11/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25840Os.9363.2.S1_x_at1/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25850Os.4610.1.S1_at11/115+14968666..14973430Superoxide dismutase, mitochondrial precursor, putative, expressed
LOC_Os05g25860Os.53558.1.S1_at11/115+14974311..14976487expressed protein
LOC_Os05g25870Os.50866.1.S1_at11/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25870OsAffx.14833.1.S1_at5/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880Os.55474.1.S1_at11/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880OsAffx.14833.1.S1_at5/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25890Os.52500.1.S1_at11/115+14983404..14988171expressed protein
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g25920Os.51741.1.S1_at3/115+14999892..15000119hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_x_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_x_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25950Os.37008.1.S1_at3/115+15006872..15008055expressed protein
LOC_Os05g25960OsAffx.27019.2.S1_at11/115+15011800..15013503No apical meristem protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52500.1.S1_at--36--7011Chr05:14987576..14987600 (25 bp)
GTACATGTGCTACCTATTGGTCGTC
LOC_Os05g25890
Os.52500.1.S1_at--433--31Chr05:14987591..14987615 (25 bp)
ATTGGTCGTCCATCCTGAAATGCTT
LOC_Os05g25890
Os.52500.1.S1_at--409--2291Chr05:14987608..14987632 (25 bp)
AAATGCTTCCTGTCAGTGGCAGTGT
LOC_Os05g25890
Os.52500.1.S1_at--17--2931Chr05:14987649..14987673 (25 bp)
AAGGCTTCAGAAACCGTTGCCAAGG
LOC_Os05g25890
Os.52500.1.S1_at--1152--5031Chr05:14987701..14987725 (25 bp)
GCAGAGTCAGTGTCGTCCTGGAGAA
LOC_Os05g25890
Os.52500.1.S1_at--92--5551Chr05:14987723..14987747 (25 bp)
GAAACTGGCTACAGACCGTGACCTG
LOC_Os05g25890
Os.52500.1.S1_at--893--5271Chr05:14987747..14987771 (25 bp)
GAATGACTTGTCTGATCCCATCACC
LOC_Os05g25890
Os.52500.1.S1_at--484--2851Chr05:14987880..14987904 (25 bp)
AAGTCCCGTGGCGAGAACCATGCAA
LOC_Os05g25890
Os.52500.1.S1_at--1083--6831Chr05:14987927..14987951 (25 bp)
GTTTCTCAGTTTTGTGTGGCTGCAC
LOC_Os05g25890
Os.52500.1.S1_at--736--5111Chr05:14987948..14987972 (25 bp)
GCACATGGCGCATTGTTCACTAGGA
LOC_Os05g25890
Os.52500.1.S1_at--246--10511Chr05:14988113..14988137 (25 bp)
TTCACTCCTACTGGCCAATTATGGT
LOC_Os05g25890
Target Sequence 
GTACATGTGCTACCTATTGGTCGTCCATCCTGAAATGCTTCCTGTCAGTGGCAGTGTGCGTGATGTTCTAGATAAGGCTT
CAGAAACCGTTGCCAAGGTCAGCTCTGGAGCTGCTGCAAGCAAGGGCAGAGTCAGTGTCGTCCTGGAGAAACTGGCTACA
GACCGTGACCTGAATGACTTGTCTGATCCCATCACCCTCGCTGGGTTTGTCTTCAGGGGCAACAAGGAAGAGGCTGTGCA
TTGTCATGAATCACTGCAAGTTCTTGCGCGCGCGTGGGTTGGGGTTCTCCTCTATGCAGCCGGCAAGTCCCGTGGCGAGA
ACCATGCAAGGCAGCTCAGCATGGGTGGGGAGTTTCTCAGTTTTGTGTGGCTGCACATGGCGCATTGTTCACTAGGAGAC
ATGGGCACATTTGAGGTTGAGCTAGTTCGACCGAGCGCGGTGAATGAGGGCGGGCGTAAGATGTTTGTATGGGGCTATCA
GCGTCCTCGGTGAACACACCACCCTCATTTCCCTCCTGGTTTTTTTGCTCAGGACACTTCACTCCTACTGGCCAATTATG
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis