Browse Element(s) Details


OsAffx.27017.1.S1_at

Description tigr:9633.m02335
TID=OsAffx.27017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2590011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25840Os.7933.1.S1_at11/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25840Os.9363.2.S1_x_at1/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25850Os.4610.1.S1_at11/115+14968666..14973430Superoxide dismutase, mitochondrial precursor, putative, expressed
LOC_Os05g25860Os.53558.1.S1_at11/115+14974311..14976487expressed protein
LOC_Os05g25870Os.50866.1.S1_at11/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25870OsAffx.14833.1.S1_at5/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880Os.55474.1.S1_at11/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880OsAffx.14833.1.S1_at5/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25890Os.52500.1.S1_at11/115+14983404..14988171expressed protein
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g25920Os.51741.1.S1_at3/115+14999892..15000119hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_x_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_x_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25950Os.37008.1.S1_at3/115+15006872..15008055expressed protein
LOC_Os05g25960OsAffx.27019.2.S1_at11/115+15011800..15013503No apical meristem protein
LOC_Os05g25974Os.21300.1.S1_at11/115+15014135..15017030expressed protein
LOC_Os05g25974Os.21300.2.S1_x_at8/115+15014135..15017030expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27017.1.S1_at--1006--3951Chr05:14988993..14989017 (25 bp)
CGGATCCAGCGGGACCAGATCTGCC
LOC_Os05g25900
OsAffx.27017.1.S1_at--645--3431Chr05:14989008..14989032 (25 bp)
CAGATCTGCCGCTGGCCTAGAGTTG
LOC_Os05g25900
OsAffx.27017.1.S1_at--146--1291Chr05:14989009..14989033 (25 bp)
AGATCTGCCGCTGGCCTAGAGTTGG
LOC_Os05g25900
OsAffx.27017.1.S1_at--333--5091Chr05:14989037..14989061 (25 bp)
GCACGGCGAGATTCGGGCCGGAGAT
LOC_Os05g25900
OsAffx.27017.1.S1_at--147--7291Chr05:14989071..14989095 (25 bp)
GTGCCTCGTCCTTGTCGTTGGCGGT
LOC_Os05g25900
OsAffx.27017.1.S1_at--331--4471Chr05:14989073..14989097 (25 bp)
GCCTCGTCCTTGTCGTTGGCGGTGA
LOC_Os05g25900
OsAffx.27017.1.S1_at--448--3791Chr05:14989075..14989099 (25 bp)
CTCGTCCTTGTCGTTGGCGGTGACA
LOC_Os05g25900
OsAffx.27017.1.S1_at--699--9411Chr05:14989076..14989100 (25 bp)
TCGTCCTTGTCGTTGGCGGTGACAT
LOC_Os05g25900
OsAffx.27017.1.S1_at--345--7271Chr05:14989078..14989102 (25 bp)
GTCCTTGTCGTTGGCGGTGACATTC
LOC_Os05g25900
OsAffx.27017.1.S1_at--234--10831Chr05:14989082..14989106 (25 bp)
TTGTCGTTGGCGGTGACATTCCTGG
LOC_Os05g25900
OsAffx.27017.1.S1_at--641--9391Chr05:14989085..14989109 (25 bp)
TCGTTGGCGGTGACATTCCTGGCGA
LOC_Os05g25900
Target Sequence 
CGGATCCAGCGGGACCAGATCTGCCGCTGGCCTAGAGTTGGGGCGCACGGCGAGATTCGGGCCGGAGATCCTCCCGCGGT
GCCTCGTCCTTGTCGTTGGCGGTGACATTCCTGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis