Browse Element(s) Details


Os.53558.1.S1_at

Description gb:AK073286.1
DB_XREF= gi:32983309
TID=Os.53558.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028J19, full insert sequence.
FL= gb:AK103719.1 gb:AK073286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2586011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25820NANA5+14952402..14953457retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g25830OsAffx.4431.1.S1_x_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25830OsAffx.4431.1.S1_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25840Os.7933.1.S1_at11/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25840Os.9363.2.S1_x_at1/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25850Os.4610.1.S1_at11/115+14968666..14973430Superoxide dismutase, mitochondrial precursor, putative, expressed
LOC_Os05g25860Os.53558.1.S1_at11/115+14974311..14976487expressed protein
LOC_Os05g25870Os.50866.1.S1_at11/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25870OsAffx.14833.1.S1_at5/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880Os.55474.1.S1_at11/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880OsAffx.14833.1.S1_at5/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25890Os.52500.1.S1_at11/115+14983404..14988171expressed protein
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g25920Os.51741.1.S1_at3/115+14999892..15000119hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53558.1.S1_at--388--3611Chr05:14975894..14975918 (25 bp)
CATTGGAGCAACATGAGGTCGCGGA
LOC_Os05g25860
Os.53558.1.S1_at--506--6011Chr05:14975943..14975967 (25 bp)
GAGAGCAGCATCTCCGAACACCGAG
LOC_Os05g25860
Os.53558.1.S1_at--289--7371Chr05:14976175..14976199 (25 bp)
GTGAAATCTCGGCACAGCCTGCATC
LOC_Os05g25860
Os.53558.1.S1_at--546--7451Chr05:14976271..14976295 (25 bp)
GTGTCTGTAAAGCTCTGTAGGTTTC
LOC_Os05g25860
Os.53558.1.S1_at--486--6931Chr05:14976287..14976311 (25 bp)
GTAGGTTTCTTGTCACATTGGGATC
LOC_Os05g25860
Os.53558.1.S1_at--731--31Chr05:14976303..14976327 (25 bp)
ATTGGGATCATATGCTCTGAGCCTC
LOC_Os05g25860
Os.53558.1.S1_at--854--9471Chr05:14976318..14976342 (25 bp)
TCTGAGCCTCTGACAATGATCTCAT
LOC_Os05g25860
Os.53558.1.S1_at--1103--711Chr05:14976333..14976357 (25 bp)
ATGATCTCATCAGTTGCTTGCTCTC
LOC_Os05g25860
Os.53558.1.S1_at--221--4931Chr05:14976348..14976372 (25 bp)
GCTTGCTCTCAAGCCTTTGATGTAC
LOC_Os05g25860
Os.53558.1.S1_at--529--2431Chr05:14976375..14976399 (25 bp)
AAAACCATTGATTAGCTTGCAGCTA
LOC_Os05g25860
Os.53558.1.S1_at--677--2831Chr05:14976399..14976423 (25 bp)
AAGTTATGCTGTACATGTGTCTTGT
LOC_Os05g25860
Target Sequence 
CATTGGAGCAACATGAGGTCGCGGAGCAAGACAAGAAGCTGATCGCCGAGAGAGCAGCATCTCCGAACACCGAGATGCAG
GAGCTGATCGCCAGGGCCCAGGAGAGGCAGAAACTCCGGCTTGAGCTCGAGAGGAAGACGGCGCGCGAGCTCGAGAGGAA
GATGGCGCGCGAGCAGCTGCAGGAGATGGAGAGGACGGCACGGCCGGTCTACGACAGCATCGACCCCAGTGTCATGAAGC
AGCTCGGGATCTCCGGCGATGCGCAGTACATCGTCAGCCCGGTGAAATCTCGGCACAGCCTGCATCGGCGCGGCGGCGGC
GGCCTGCTACAGAAGCTCGGCTTCTTCCTCAAAGAATAGCATGATCCATCATCAATGGTGTCTGTAAAGCTCTGTAGGTT
TCTTGTCACATTGGGATCATATGCTCTGAGCCTCTGACAATGATCTCATCAGTTGCTTGCTCTCAAGCCTTTGATGTACT
TAAAACCATTGATTAGCTTGCAGCTAAGTTATGCTGTACATGTGTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis