Browse Element(s) Details


Os.55474.1.S1_at

Description gb:AK108151.1
DB_XREF= gi:32993360
TID=Os.55474.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-F10, full insert sequence.
FL= gb:AK108151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2588011/11N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25830OsAffx.4431.1.S1_x_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25830OsAffx.4431.1.S1_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25840Os.7933.1.S1_at11/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25840Os.9363.2.S1_x_at1/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25850Os.4610.1.S1_at11/115+14968666..14973430Superoxide dismutase, mitochondrial precursor, putative, expressed
LOC_Os05g25860Os.53558.1.S1_at11/115+14974311..14976487expressed protein
LOC_Os05g25870Os.50866.1.S1_at11/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25870OsAffx.14833.1.S1_at5/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880Os.55474.1.S1_at11/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880OsAffx.14833.1.S1_at5/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25890Os.52500.1.S1_at11/115+14983404..14988171expressed protein
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g25920Os.51741.1.S1_at3/115+14999892..15000119hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_x_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_x_at11/115+15004563..15005344hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0003723molecular_functionRNA binding
GO:0004809molecular_functiontRNA (guanine-N2-)-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55474.1.S1_at--987--3231Chr05:14979452..14979476 (25 bp)
CAAGAAGGTGAGTCCGTGGTCCATT
LOC_Os05g25880
Os.55474.1.S1_at--928--6091Chr05:14979443..14979467 (25 bp)
GAGTCCGTGGTCCATTTCGGCATGA
LOC_Os05g25880
Os.55474.1.S1_at--1142--171Chr05:14979430..14979454 (25 bp)
ATTTCGGCATGACACATCTCGGGTA
LOC_Os05g25880
Os.55474.1.S1_at--510--5631Chr05:14979420..14979444 (25 bp)
GACACATCTCGGGTAGTATCATCCA
LOC_Os05g25880
Os.55474.1.S1_at--541--3771Chr05:14979413..14979437 (25 bp)
CTCGGGTAGTATCATCCAATTTGTA
LOC_Os05g25880
Os.55474.1.S1_at--291--591Chr05:14979400..14979424 (25 bp)
ATCCAATTTGTAATGCCTTCGCCTT
LOC_Os05g25880
Os.55474.1.S1_at--764--211Chr05:14979395..14979419 (25 bp)
ATTTGTAATGCCTTCGCCTTAGCTT
LOC_Os05g25880
Os.55474.1.S1_at--712--10631Chr05:14979383..14979407 (25 bp)
TTCGCCTTAGCTTCTTAAAGCTTGT
LOC_Os05g25880
Os.55474.1.S1_at--158--3671Chr05:14979370..14979394 (25 bp)
CTTAAAGCTTGTGCTAATTCATCAA
LOC_Os05g25880
Os.55474.1.S1_at--842--4831Chr05:14979358..14979382 (25 bp)
GCTAATTCATCAAGCATTTCTATCT
LOC_Os05g25880
Os.55474.1.S1_at--1124--9591Chr05:14979352..14979376 (25 bp)
TCATCAAGCATTTCTATCTTTTGTC
LOC_Os05g25880
Target Sequence 
CAAGAAGGTGAGTCCGTGGTCCATTTCGGCATGACACATCTCGGGTAGTATCATCCAATTTGTAATGCCTTCGCCTTAGC
TTCTTAAAGCTTGTGCTAATTCATCAAGCATTTCTATCTTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis