Browse Element(s) Details


OsAffx.14833.1.S1_at

Description tigr:9633.m02332
TID=OsAffx.14833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to N2, N2-dimethylguanosine tRNA methyltransferases-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g258805/11N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g258705/11N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25830OsAffx.4431.1.S1_x_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25830OsAffx.4431.1.S1_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25840Os.7933.1.S1_at11/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25840Os.9363.2.S1_x_at1/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25850Os.4610.1.S1_at11/115+14968666..14973430Superoxide dismutase, mitochondrial precursor, putative, expressed
LOC_Os05g25860Os.53558.1.S1_at11/115+14974311..14976487expressed protein
LOC_Os05g25870Os.50866.1.S1_at11/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25870OsAffx.14833.1.S1_at5/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880Os.55474.1.S1_at11/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880OsAffx.14833.1.S1_at5/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25890Os.52500.1.S1_at11/115+14983404..14988171expressed protein
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g25920Os.51741.1.S1_at3/115+14999892..15000119hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_x_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_x_at11/115+15004563..15005344hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0003723molecular_functionRNA binding
GO:0004809molecular_functiontRNA (guanine-N2-)-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14833.1.S1_at--238--2751Chr05:14978722..14978742 (21 bp)
AAGAAGCTCTTTGTCATCATATGGA
LOC_Os05g25880
OsAffx.14833.1.S1_at--523--9551Chr05:14978715..14978739 (25 bp)
TCTTTGTCATCATATGGAGCATATA
LOC_Os05g25880
OsAffx.14833.1.S1_at--502--5931Chr05:14978699..14978723 (25 bp)
GAGCATATATACGTCCAGTGCCATA
LOC_Os05g25880
OsAffx.14833.1.S1_at--953--231Chr05:14978695..14978719 (25 bp)
ATATATACGTCCAGTGCCATATCCG
LOC_Os05g25880
OsAffx.14833.1.S1_at--333--1911Chr05:14978689..14978713 (25 bp)
ACGTCCAGTGCCATATCCGAATGAG
LOC_Os05g25880
OsAffx.14833.1.S1_at--819--4431NONE
GCCATATCCGAATGAGGATCCCGAT
NONE
OsAffx.14833.1.S1_at--396--8891Chr05:14977716..14977738 (23 bp)
TGAGGATCCCGATTCGATCACTGTT
LOC_Os05g25870
OsAffx.14833.1.S1_at--522--551Chr05:14977711..14977735 (25 bp)
ATCCCGATTCGATCACTGTTGTAGG
LOC_Os05g25870
OsAffx.14833.1.S1_at--33--9391Chr05:14977703..14977727 (25 bp)
TCGATCACTGTTGTAGGACCACTTT
LOC_Os05g25870
OsAffx.14833.1.S1_at--676--3331Chr05:14977698..14977722 (25 bp)
CACTGTTGTAGGACCACTTTGGACA
LOC_Os05g25870
OsAffx.14833.1.S1_at--363--1711Chr05:14977686..14977710 (25 bp)
ACCACTTTGGACAGGTCCTCTCCAT
LOC_Os05g25870
Target Sequence 
AAGAAGCTCTTTGTCATCATATGGAGCATATATACGTCCAGTGCCATATCCGAATGAGGATCCCGATTCGATCACTGTTG
TAGGACCACTTTGGACAGGTCCTCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis