Browse Element(s) Details


Os.7933.1.S1_at

Description gb:AK101553.1
DB_XREF= gi:32986762
TID=Os.7933.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033049N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033049N14, full insert sequence.
FL= gb:AK059093.1 gb:AK101553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2584011/11ABC1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25800OsAffx.27015.2.S1_at11/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.2.S1_x_at11/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.1.S1_at10/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.1.S1_x_at9/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.24317.3.S1_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800Os.53746.1.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.24317.5.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.31512.1.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25810OsAffx.27016.1.S1_at10/115+14946952..14948280hypothetical protein
LOC_Os05g25820NANA5+14952402..14953457retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g25830OsAffx.4431.1.S1_x_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25830OsAffx.4431.1.S1_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25840Os.7933.1.S1_at11/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25840Os.9363.2.S1_x_at1/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25850Os.4610.1.S1_at11/115+14968666..14973430Superoxide dismutase, mitochondrial precursor, putative, expressed
LOC_Os05g25860Os.53558.1.S1_at11/115+14974311..14976487expressed protein
LOC_Os05g25870Os.50866.1.S1_at11/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25870OsAffx.14833.1.S1_at5/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880Os.55474.1.S1_at11/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880OsAffx.14833.1.S1_at5/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25890Os.52500.1.S1_at11/115+14983404..14988171expressed protein
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7933.1.S1_at--258--5211Chr05:14965999..14966023 (25 bp)
GAATTGCGAGTCCTAGTTGTGAAAG
LOC_Os05g25840
Os.7933.1.S1_at--889--2671Chr05:14966024..14966048 (25 bp)
AAGCGGTTCGTGTCACAGAAGCCAT
LOC_Os05g25840
Os.7933.1.S1_at--917--1511Chr05:14966038..14966062 (25 bp)
ACAGAAGCCATCACTTTTGGAACGC
LOC_Os05g25840
Os.7933.1.S1_at--1045--6571Chr05:14966064..14966088 (25 bp)
GATTGATTCGTATAATGCAGCTCCA
LOC_Os05g25840
Os.7933.1.S1_at--718--251Chr05:14966107..14966131 (25 bp)
ATATCCAGTGGTAATCCAGCCGGAC
LOC_Os05g25840
Os.7933.1.S1_at--737--8091Chr05:14966128..14966152 (25 bp)
GGACCGTTCAAGATAAGCGACACTG
LOC_Os05g25840
Os.7933.1.S1_at--798--1271Chr05:14966209..14966233 (25 bp)
AGATCCTCGGATGGCTTTGACCCAA
LOC_Os05g25840
Os.7933.1.S1_at--882--10731Chr05:14966399..14966423 (25 bp)
TTGCAGGAGGTGTTACGCAGCGCCT
LOC_Os05g25840
Os.7933.1.S1_at--371--2251Chr05:14966496..14966520 (25 bp)
AAATTCACACGGTACTTTCCACAGG
LOC_Os05g25840
Os.7933.1.S1_at--393--6651Chr05:14966560..14966584 (25 bp)
GTTGATTTCTTCATTCATGCCGGAT
LOC_Os05g25840
Os.7933.1.S1_at--151--2251Chr05:14966646..14966670 (25 bp)
AAATCAGGAACTCTTCTCCACTTGA
LOC_Os05g25840
Target Sequence 
GAATTGCGAGTCCTAGTTGTGAAAGAAGCGGTTCGTGTCACAGAAGCCATCACTTTTGGAACGCTGATTGATTCGTATAA
TGCAGCTCCAGAATTTCTTAAACCATTAATATCCAGTGGTAATCCAGCCGGACCGTTCAAGATAAGCGACACTGAAAGGG
AACAAATGATTGAGCTGCGGGACAGGGTTTTCAGAATATGGGGCCTTCTGAGATCCTCGGATGGCTTTGACCCAACCATC
TTGCAACCAATTGTGCAGGTGCTACAAGAGCCAGAGGCCCGCGTTCTTGGCTCCCGGGTTGCAGGAGGTGTTACGCAGCG
CCTCGCGGCCCGCCTGTTGCAGCAGCTGCTGAGAACTCCACCTGCTCCAGGATCTCCTTAGCAGATAAGACATGTAAATT
CACACGGTACTTTCCACAGGAAAGAGAAAAGGAAATGTAATTCGGAAATCAAGTATAAAGTTGATTTCTTCATTCATGCC
GGATANANNNANNNNNNANANNTNNGNNGNNNNNNNNNANNNNNNGAAAAATTTTGGGTCTACGAAAATCAGGAACTCTT
CTCCACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis