Browse Element(s) Details


Os.37008.1.S1_at

Description gb:AK061394.1
DB_XREF= gi:32971412
TID=Os.37008.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-D12, full insert sequence.
FL= gb:AK061394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2602011/11expressed protein
LOC_Os05g259503/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26000NANA5+15020805..15029085retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g26010Os.14919.1.S1_at3/115+15038528..15044635transposon protein, putative, Mutator sub-class
LOC_Os05g26010OsAffx.29313.1.S1_at1/115+15038528..15044635transposon protein, putative, Mutator sub-class
LOC_Os05g26020Os.37008.1.S1_at11/115+15046499..15047742expressed protein
LOC_Os05g26026OsAffx.27019.1.S1_at11/115+15049526..15050488hypothetical protein
LOC_Os05g26032Os.49990.1.S1_at11/115+15051313..15053406expressed protein
LOC_Os05g26040OsAffx.4433.1.S1_at10/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26040OsAffx.27020.1.S1_x_at2/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26040OsAffx.16356.1.S1_at1/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37008.1.S1_at--215--9971Chr05:15047164..15047188 (25 bp)
TACCGCCTGTTCGTCAGTGCTGACG
LOC_Os05g26020
Os.37008.1.S1_at--472--1132Chr05:15047179..15047203 (25 bp)
AGTGCTGACGAGTTCGACTGGTTCT
LOC_Os05g26020
Os.37008.1.S1_at--43--1252Chr05:15047346..15047370 (25 bp)
AGTTGTCGCCAACTAGGTCCACGAT
LOC_Os05g26020
Os.37008.1.S1_at--17--10091Chr05:15047359..15047383 (25 bp)
TAGGTCCACGATTTCTGCATCCACT
LOC_Os05g26020
Os.37008.1.S1_at--175--4991Chr05:15047375..15047399 (25 bp)
GCATCCACTGGTTCAATTATTTACA
LOC_Os05g26020
Os.37008.1.S1_at--517--10571Chr05:15047409..15047433 (25 bp)
TTCTTTTGCTGCTTGTTGTCTACGA
LOC_Os05g26020
Os.37008.1.S1_at--583--6631Chr05:15047423..15047447 (25 bp)
GTTGTCTACGAGTTGTTTGCAGGTG
LOC_Os05g26020
Os.37008.1.S1_at--143--9672Chr05:15047539..15047563 (25 bp)
TCAGCGGCCATGAGTAGAGTGAAAA
LOC_Os05g26020
Os.37008.1.S1_at--531--2411Chr05:15047563..15047587 (25 bp)
AAAACACCAGTTTTACTCATAGGAT
LOC_Os05g26020
Os.37008.1.S1_at--602--3191Chr05:15047618..15047642 (25 bp)
CAATCCCTGTCTTGAATTTCCATCT
LOC_Os05g26020
Os.37008.1.S1_at--819--8871Chr05:15047670..15047694 (25 bp)
TGATGTCCTTTTTTCTATCTTTCTG
LOC_Os05g26020
Target Sequence 
TACCGCCTGTTCGTCAGTGCTGACGAGTTCGACTGGTTCTGCCGTGTCCTGGAGCGAGGGCCGCGTCCAAGCGGGAGATG
CGGCGGCGGCGGTGGTGGTAGGAAGAGGACGGCGGCAGAAGCTGTGGAGGGAGAAGCGGAGGACGACCGCCGCCGCGTCT
GGGCCTCCTTGCCGCCGCCATCAGTTGTCGCCAACTAGGTCCACGATTTCTGCATCCACTGGTTCAATTATTTACATAAT
GTATTTTCTTTTGCTGCTTGTTGTCTACGAGTTGTTTGCAGGTGGCAAGGGTGGAGAAGATGCAGTTGGCGTTGGAAGAG
TTCGATCAGACGAGGCAAGGGTGGAGAAGATGCAGCCGGCGTTGGAAGAGTTCGATCAGCGGCCATGAGTAGAGTGAAAA
AAACACCAGTTTTACTCATAGGATGTTTAGCAACTGTTAGCTCTGTCAAATTATCAATCCCTGTCTTGAATTTCCATCTT
ATTGGAAGTAGATAAAGAAATGTTAATGATGTCCTTTTTTCTATCTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis