Browse Element(s) Details


Os.49990.1.S1_at

Description gb:AK119497.1
DB_XREF= gi:37989120
TID=Os.49990.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-E03, full insert sequence.
FL= gb:AK119497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2603211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26000NANA5+15020805..15029085retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g26010Os.14919.1.S1_at3/115+15038528..15044635transposon protein, putative, Mutator sub-class
LOC_Os05g26010OsAffx.29313.1.S1_at1/115+15038528..15044635transposon protein, putative, Mutator sub-class
LOC_Os05g26020Os.37008.1.S1_at11/115+15046499..15047742expressed protein
LOC_Os05g26026OsAffx.27019.1.S1_at11/115+15049526..15050488hypothetical protein
LOC_Os05g26032Os.49990.1.S1_at11/115+15051313..15053406expressed protein
LOC_Os05g26040OsAffx.4433.1.S1_at10/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26040OsAffx.27020.1.S1_x_at2/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26040OsAffx.16356.1.S1_at1/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49990.1.S1_at--1045--6091Chr05:15052028..15052052 (25 bp)
GAGTCATAGTCTCATTCTCCATGAT
LOC_Os05g26032
Os.49990.1.S1_at--1076--6291Chr05:15051816..15051985 (25 bp)
GATGAGGCCATGACGATAGTACTTC
LOC_Os05g26032
Os.49990.1.S1_at--910--2811Chr05:15051757..15051781 (25 bp)
AAGTTACTCGACACAAGTGCCGCTG
LOC_Os05g26032
Os.49990.1.S1_at--75--8751Chr05:15051691..15051715 (25 bp)
TGTACTCCAGTACGGTGTAAAGCCA
LOC_Os05g26032
Os.49990.1.S1_at--715--9831Chr05:15051674..15051698 (25 bp)
TAAAGCCACCGTTGGGCGCTGGAGA
LOC_Os05g26032
Os.49990.1.S1_at--224--10851Chr05:15051663..15051687 (25 bp)
TTGGGCGCTGGAGATGACACATCTT
LOC_Os05g26032
Os.49990.1.S1_at--336--3631Chr05:15051641..15051665 (25 bp)
CTTGCTGGACTGGAGATGATCCATT
LOC_Os05g26032
Os.49990.1.S1_at--191--9851Chr05:15051576..15051600 (25 bp)
TACACAAGAAGCCTACTGAGTTTTT
LOC_Os05g26032
Os.49990.1.S1_at--500--8351Chr05:15051541..15051565 (25 bp)
GGCGTGGTGTAATATTTTGCTGCTC
LOC_Os05g26032
Os.49990.1.S1_at--434--491Chr05:15051472..15051496 (25 bp)
ATCGGCTGTGCAGGAATCTGTCTCT
LOC_Os05g26032
Os.49990.1.S1_at--444--331Chr05:15051347..15051371 (25 bp)
ATACATCCTGATACGGTGGTACCTG
LOC_Os05g26032
Target Sequence 
GAGTCATAGTCTCATTCTCCATGATACACAAAGCGAGCAAGATGAGTTACATGGCCATCCCATGAGGGATGAGGCCATGA
CGATAGTACTTCAGTTTGCAGAAGATGATCAGATCAAACTTGTTGTAAGTTACTCGACACAAGTGCCGCTGACAAGAAAG
TAGAGAGTAAAGAAACAGGCCAGACGGGAGAGTGTACTCCAGTACGGTGTAAAGCCACCGTTGGGCGCTGGAGATGACAC
ATCTTGCTGGACTGGAGATGATCCATTTGCAGAAGTGGAGATGACACATCTTGCTGGAGATGGCCTGTACACAAGAAGCC
TACTGAGTTTTTAGAAAATTGTGGCGTGGTGTAATATTTTGCTGCTCGCTTCAGATTGCATTTAATCAGATGCAAAGGAA
TCATATTGTTAATCGGCTGTGCAGGAATCTGTCTCTTGTTGTATTGGAGCCTGCAAAAGGTGGTTGTAAAGTCTTGGGGA
TAGCATTTTTTGTTTTGTACAACCTTCAGTAAAATATGTAAGATGTAATTGTCAGTATACATCCTGATACGGTGGTACCT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis