Browse Element(s) Details


OsAffx.27019.1.S1_at

Description tigr:9633.m02347
TID=OsAffx.27019.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2602611/11hypothetical protein
LOC_Os05g2604911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26000NANA5+15020805..15029085retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g26010Os.14919.1.S1_at3/115+15038528..15044635transposon protein, putative, Mutator sub-class
LOC_Os05g26010OsAffx.29313.1.S1_at1/115+15038528..15044635transposon protein, putative, Mutator sub-class
LOC_Os05g26020Os.37008.1.S1_at11/115+15046499..15047742expressed protein
LOC_Os05g26026OsAffx.27019.1.S1_at11/115+15049526..15050488hypothetical protein
LOC_Os05g26032Os.49990.1.S1_at11/115+15051313..15053406expressed protein
LOC_Os05g26040OsAffx.4433.1.S1_at10/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26040OsAffx.27020.1.S1_x_at2/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26040OsAffx.16356.1.S1_at1/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27019.1.S1_at--873--3572Chr05:15049929..15049953 (25 bp)
CATTTAAGCCGAGCCGGGTGATCGT
LOC_Os05g26026
OsAffx.27019.1.S1_at--319--8252Chr05:15050000..15050024 (25 bp)
GGCAGCGTGTATGACGACGGATCCC
LOC_Os05g26026
OsAffx.27019.1.S1_at--65--8772Chr05:15050007..15050031 (25 bp)
TGTATGACGACGGATCCCGGCGAGC
LOC_Os05g26026
OsAffx.27019.1.S1_at--338--1872Chr05:15050259..15050283 (25 bp)
ACGAGGAAATCCTGGACCTGCTCCG
LOC_Os05g26026
OsAffx.27019.1.S1_at--229--9112Chr05:15050277..15050301 (25 bp)
TGCTCCGCTGCTTCGCGGACGTCGA
LOC_Os05g26026
OsAffx.27019.1.S1_at--21--7232Chr05:15050303..15050327 (25 bp)
GTGCGACACATATATCGGGAGGGCA
LOC_Os05g26026
OsAffx.27019.1.S1_at--1036--492Chr05:15050316..15050340 (25 bp)
ATCGGGAGGGCAACTCGATGGCCCA
LOC_Os05g26026
OsAffx.27019.1.S1_at--853--8712Chr05:15050348..15050372 (25 bp)
TGTCGCCAGGCGTACGTGCATCCCG
LOC_Os05g26026
OsAffx.27019.1.S1_at--669--9052Chr05:15050364..15050388 (25 bp)
TGCATCCCGGGCTGTGGACAGATTG
LOC_Os05g26026
OsAffx.27019.1.S1_at--1004--8652Chr05:15050376..15050400 (25 bp)
TGTGGACAGATTGCGCCACGCTGCC
LOC_Os05g26026
OsAffx.27019.1.S1_at--949--1452Chr05:15050415..15050439 (25 bp)
AGAAGATCGACGATGATCTGCGCGG
LOC_Os05g26026
Target Sequence 
CATTTAAGCCGAGCCGGGTGATCGTCAGANGGTGGGCGCCGCCGGGGGGNNNGNNNNAANNNNANNTTNNNGGCAGCGTG
TATGACGACGGATCCCGGCGAGCGAGCATCGGCGGCGTGATCCGCGGCTGCGACGGTGGCGTGGTGCTCGCCTTCGCGGA
GATCACGGAGCACTGGACGGTTGGCGTGGTGGAGGCCCGTGCGATGATCCGGGGGCTGAGGCTCGCGCTGGCGTGCTTCG
TCGAGCGGCTTGTCGTCGAGGGCGACGACCTGGTGCTGGTTCAGCTCATCCGCGGCGAGGAGACGCAGACGAGGATCCCG
GCGGCGATGCACGAGGAAATCCTGGACCTGCTCCGCTGCTTCGCGGACGTCGAGGTGCGACACATATATCGGGAGGGCAA
CTCGATGGCCCACACCCTGTGTCGCCAGGCGTACGTGCATCCCGGGCTGTGGACAGATTGCGCCACGCTGCCGGCCGCCG
TCTGGGAGAAGATCGACGATGATCTGCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis