Browse Element(s) Details


OsAffx.16356.1.S1_at

Description tigr:9635.m02083
TID=OsAffx.16356.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2212011/11hypothetical protein
LOC_Os05g260401/11Pumilio-family RNA binding repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22070Os.32835.1.S1_x_at3/117+12333989..12337057retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22070Os.32823.1.S1_x_at2/117+12333989..12337057retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22070OsAffx.512.1.S1_at1/117+12333989..12337057retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22070OsAffx.512.1.S1_x_at1/117+12333989..12337057retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22080Os.27691.2.S1_x_at1/117+12340614..12341540retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22090NANA7+12341959..12345902retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22100NANA7+12349684..12350885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22110OsAffx.28535.1.S1_at11/117+12355421..12357954hypothetical protein
LOC_Os07g22120OsAffx.16356.1.S1_at11/117+12361674..12363291hypothetical protein
LOC_Os07g22129OsAffx.5396.1.A1_at11/117+12367506..12367985retrotransposon protein, putative, unclassified
LOC_Os07g22140OsAffx.15708.1.S1_at1/117+12370773..12371977retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22150OsAffx.5397.1.S1_at11/117+12373289..12373525hypothetical protein
LOC_Os07g22160OsAffx.9790.1.S1_x_at1/117+12376363..12376884retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22170NANA7+12378313..12381509hypothetical protein
LOC_Os07g22180NANA7+12381940..12383436retrotransposon protein, putative, unclassified
LOC_Os07g22190NANA7+12385649..12387753retrotransposon, putative, centromere-specific
LOC_Os07g22200OsAffx.22699.1.S1_x_at1/117+12387952..12393273retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16356.1.S1_at--33--8811Chr07:12362227..12362251 (25 bp)
TGTTGCTCTAGAAAACCCCAATCCT
LOC_Os07g22120
OsAffx.16356.1.S1_at--531--4311Chr07:12362249..12362273 (25 bp)
CCTTCTCAATCCAATATGCTGTCGG
LOC_Os07g22120
OsAffx.16356.1.S1_at--1000--3851Chr07:12362267..12362291 (25 bp)
CTGTCGGAAAATCTTGCCATGGCTA
LOC_Os07g22120
OsAffx.16356.1.S1_at--582--5911Chr07:12362920..12362941 (22 bp)
GAGCTAGGGTATCCTCTAGACTTCC
LOC_Os07g22120
OsAffx.16356.1.S1_at--77--10671Chr07:12362938..12362962 (25 bp)
TTCCGCTCTACAAGTTACATCTCTA
LOC_Os07g22120
OsAffx.16356.1.S1_at--762--2091Chr07:12362954..12362978 (25 bp)
ACATCTCTAGAGCTATGGGTTTGTT
LOC_Os07g22120
OsAffx.16356.1.S1_at--616--8011Chr07:12363000..12363024 (25 bp)
GGAGGTTGATGCTATCCCTGGTCGT
LOC_Os07g22120
OsAffx.16356.1.S1_at--84--7811Chr07:12363019..12363043 (25 bp)
GGTCGTGTTCTGTTGCAGGCATATT
LOC_Os07g22120
OsAffx.16356.1.S1_at--168--3991Chr07:12363116..12363140 (25 bp)
CGTGGACCTTTGGAGTGCTTAACTT
LOC_Os07g22120
OsAffx.16356.1.S1_at--81--2831Chr07:12363148..12363172 (25 bp)
AAGTTTGCTAATCCACAACCGCAAG
LOC_Os07g22120
OsAffx.16356.1.S1_at--289--9712Chr07:12363222..12363246 (25 bp)
TCAACATCAAGGTCCAGCTTGGGAT
LOC_Os07g22120
Target Sequence 
TGTTGCTCTAGAAAACCCCAATCCTTCTCAATCCAATATGCTGTCGGAAAATCTTGCCATGGCTAAGGGCATGTTTGGCA
TAGCTCCAGCTCCTGCTCCATCCCTCCTAGATCTGGAGCTCAACCAAACAGTTTCAGCTCCACCAAAACTGGGAGTGGAG
CTAGGGTATCCTCTAGACTTCCGCTCTACAAGTTACATCTCTAGAGCTATGGGTTTGTTTGGAAAGTTAGACTACTTGCA
GGAGGTTGATGCTATCCCTGGTCGTGTTCTGTTGCAGGCATATTTTGATGGTGTTGATTTGATTCCTAATCATGGTGGTC
AAGGGGAATCGTGGACCTTTGGAGTGCTTAACTTAAATAATAAGTTTGCTAATCCACAACCGCAAGATGAAGATTTGCCC
CCTATTGGTGTCCCGCCACCGCCACCAGGCCCCACTCAACATCAAGGTCCAGCTTGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis