Browse Element(s) Details


OsAffx.512.1.S1_at

Description gb:XM_354233.1
DB_XREF= gi:35189899
TID=OsAffx.512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g220701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22000OsAffx.22711.4.A1_x_at2/117+12300539..12309218retrotransposon, putative, centromere-specific
LOC_Os07g22000OsAffx.25367.1.S1_at1/117+12300539..12309218retrotransposon, putative, centromere-specific
LOC_Os07g22000OsAffx.22927.1.S1_x_at1/117+12300539..12309218retrotransposon, putative, centromere-specific
LOC_Os07g22024Os.54086.1.A1_at11/117+12311829..12324069Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os07g22024OsAffx.5395.1.S1_at10/117+12311829..12324069Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os07g22050NANA7+12324835..12327008retrotransposon, putative, centromere-specific
LOC_Os07g22060NANA7+12328970..12332868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22070Os.32835.1.S1_x_at3/117+12333989..12337057retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22070Os.32823.1.S1_x_at2/117+12333989..12337057retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22070OsAffx.512.1.S1_at1/117+12333989..12337057retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22070OsAffx.512.1.S1_x_at1/117+12333989..12337057retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22080Os.27691.2.S1_x_at1/117+12340614..12341540retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22090NANA7+12341959..12345902retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22100NANA7+12349684..12350885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22110OsAffx.28535.1.S1_at11/117+12355421..12357954hypothetical protein
LOC_Os07g22120OsAffx.16356.1.S1_at11/117+12361674..12363291hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.512.1.S1_at--198--2351NONE
AAAGAATCCCTGACAGGAGGCAAAT
NONE
OsAffx.512.1.S1_at--774--9531Chr07:8953559..8953583 (25 bp)
TCTACTGCAGTATGAGTATTTCTGA
NONE
OsAffx.512.1.S1_at--575--5031Chr07:8953565..8953589 (25 bp)
GCAGTATGAGTATTTCTGAAACTAT
NONE
OsAffx.512.1.S1_at--664--4112Chr07:8953591..8953615 (25 bp)
CGAATAGCCGTGCTTACGGATATTA
NONE
OsAffx.512.1.S1_at--524--9931Chr07:8953605..8953629 (25 bp)
TACGGATATTAAGCATCGAGACTCA
NONE
OsAffx.512.1.S1_at--1089--3312Chr07:8953628..8953744 (25 bp)
CACTATGGCATCTTGATCTAGCCAC
NONE
OsAffx.512.1.S1_at--25--8512Chr07:8953633..8953749 (25 bp)
TGGCATCTTGATCTAGCCACTACGC
NONE
OsAffx.512.1.S1_at--923--10771NONE
TTGATCTAGCCACTACGCCGGACCA
NONE
OsAffx.512.1.S1_at--152--10271NONE
TTTGACAGGTTTGGTCTTGCCACTA
NONE
OsAffx.512.1.S1_at--160--5631NONE
GACAGGTTTGGTCTTGCCACTAAAA
NONE
OsAffx.512.1.S1_at--60--6851NONE
GTTTGGTCTTGCCACTAAAAAGCCG
NONE
Target Sequence 
AAAGAATCCCTGACAGGAGGCAAATTTACGCCGAGCAGGGCGATTATAATATTTACCGAGGCACAGGTTTGATGAATATT
AGCATGTCATGGATGGCGGGTAAAGCATACATCTACTGCAGTATGAGTATTTCTGAAACTATTCGAATAGCCGTGCTTAC
GGATATTAAGCATCGAGACTCACTATGGCATCTTGATCTAGCCACTACGCCGGACCATGTCATCTCTGACGGGCCCAAAC
CCTCACCTTTGACAGGTTTGGTCTTGCCACTAAAAAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis