Browse Element(s) Details


OsAffx.512.1.S1_x_at

Description gb:XM_354233.1
DB_XREF= gi:35189899
TID=OsAffx.512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g120801/11expressed protein
LOC_Os07g220701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12010OsAffx.31705.2.S1_at10/1112+6582236..6585235Leucine Rich Repeat family protein
LOC_Os12g12020NANA12+6588993..6589523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12030Os.54151.1.S1_x_at2/1112+6590751..6592904retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12040Os.38764.1.S1_x_at8/1112+6595058..6597584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12040Os.45173.1.S1_x_at2/1112+6595058..6597584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12040Os.10731.1.A1_a_at1/1112+6595058..6597584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12050NANA12+6602070..6605019retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12060NANA12+6607455..6608453retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12070OsAffx.19621.1.S1_at11/1112+6609284..6609814hypothetical protein
LOC_Os12g12080Os.40001.1.A1_at9/1112+6609704..6623597expressed protein
LOC_Os12g12080OsAffx.16205.1.S1_at2/1112+6609704..6623597expressed protein
LOC_Os12g12080OsAffx.512.1.S1_x_at1/1112+6609704..6623597expressed protein
LOC_Os12g12090Os.4921.1.S1_at11/1112+6624346..6624930expressed protein
LOC_Os12g12100NANA12+6627865..6628454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12110OsAffx.31708.1.S1_at9/1112+6639548..6642074hypothetical protein
LOC_Os12g12120OsAffx.31705.2.S1_at4/1112+6646336..6649272Leucine Rich Repeat family protein, expressed
LOC_Os12g12120OsAffx.27330.1.S1_s_at1/1112+6646336..6649272Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.512.1.S1_x_at--197--2351NONE
AAAGAATCCCTGACAGGAGGCAAAT
NONE
OsAffx.512.1.S1_x_at--205--3851Chr07:8953563..8953587 (25 bp)
CTGCAGTATGAGTATTTCTGAAACT
NONE
OsAffx.512.1.S1_x_at--665--4112Chr07:8953591..8953615 (25 bp)
CGAATAGCCGTGCTTACGGATATTA
NONE
OsAffx.512.1.S1_x_at--525--9931Chr07:8953605..8953629 (25 bp)
TACGGATATTAAGCATCGAGACTCA
NONE
OsAffx.512.1.S1_x_at--867--852Chr07:8953632..8953748 (25 bp)
ATGGCATCTTGATCTAGCCACTACG
NONE
OsAffx.512.1.S1_x_at--924--10771NONE
TTGATCTAGCCACTACGCCGGACCA
NONE
OsAffx.512.1.S1_x_at--135--4492Chr07:8953748..8953772 (25 bp)
GCCGGACCATGTCATCTCTGACGGG
NONE
OsAffx.512.1.S1_x_at--151--10271NONE
TTTGACAGGTTTGGTCTTGCCACTA
NONE
OsAffx.512.1.S1_x_at--159--5631NONE
GACAGGTTTGGTCTTGCCACTAAAA
NONE
OsAffx.512.1.S1_x_at--59--6851NONE
GTTTGGTCTTGCCACTAAAAAGCCG
NONE
OsAffx.512.1.S1_x_at--623--10677Chr12:6610482..6610507 (25 bp)
TTCCATGGGACGTTCGCGGTTTACT
LOC_Os12g12080
Target Sequence 
AAAGAATCCCTGACAGGAGGCAAATTTACGCCGAGCAGGGCGATTATAATATTTACCGAGGCACAGGTTTGATGAATATT
AGCATGTCATGGATGGCGGGTAAAGCATACATCTACTGCAGTATGAGTATTTCTGAAACTATTCGAATAGCCGTGCTTAC
GGATATTAAGCATCGAGACTCACTATGGCATCTTGATCTAGCCACTACGCCGGACCATGTCATCTCTGACGGGCCCAAAC
CCTCACCTTTGACAGGTTTGGTCTTGCCACTAAAAAGCCGCCGGTTGGAACTTTACGCCTTCCATGGGACGTTCGCGGTT
TACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.512.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis