Browse Element(s) Details


OsAffx.19621.1.S1_at

Description tigr:9640.m01151
TID=OsAffx.19621.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1207011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12010OsAffx.31705.2.S1_at10/1112+6582236..6585235Leucine Rich Repeat family protein
LOC_Os12g12020NANA12+6588993..6589523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12030Os.54151.1.S1_x_at2/1112+6590751..6592904retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12040Os.38764.1.S1_x_at8/1112+6595058..6597584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12040Os.45173.1.S1_x_at2/1112+6595058..6597584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12040Os.10731.1.A1_a_at1/1112+6595058..6597584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12050NANA12+6602070..6605019retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12060NANA12+6607455..6608453retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12070OsAffx.19621.1.S1_at11/1112+6609284..6609814hypothetical protein
LOC_Os12g12080Os.40001.1.A1_at9/1112+6609704..6623597expressed protein
LOC_Os12g12080OsAffx.16205.1.S1_at2/1112+6609704..6623597expressed protein
LOC_Os12g12080OsAffx.512.1.S1_x_at1/1112+6609704..6623597expressed protein
LOC_Os12g12090Os.4921.1.S1_at11/1112+6624346..6624930expressed protein
LOC_Os12g12100NANA12+6627865..6628454transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19621.1.S1_at--645--8252Chr12:6609671..6609695 (25 bp)
GGCAGCCTCGCCGAATACTTATAGG
LOC_Os12g12070
OsAffx.19621.1.S1_at--49--1651Chr12:6609668..6609692 (25 bp)
AGCCTCGCCGAATACTTATAGGTGG
LOC_Os12g12070
OsAffx.19621.1.S1_at--772--311Chr12:6609657..6609681 (25 bp)
ATACTTATAGGTGGCAAAAGGCGGT
LOC_Os12g12070
OsAffx.19621.1.S1_at--359--4832Chr12:6609591..6609615 (25 bp)
GTGACGGCGCCGTGGAAAAGAAAAT
LOC_Os12g12070
OsAffx.19621.1.S1_at--839--5511Chr12:6609572..6609596 (25 bp)
GAAAATGACGGCGTCGGCTCTGTGC
LOC_Os12g12070
OsAffx.19621.1.S1_at--139--2291Chr12:6609570..6609594 (25 bp)
AAATGACGGCGTCGGCTCTGTGCTC
LOC_Os12g12070
OsAffx.19621.1.S1_at--446--4813Chr12:6609556..6609580 (25 bp)
GCTCTGTGCTCCGATTGGATGTCGA
LOC_Os12g12070
OsAffx.19621.1.S1_at--741--8693Chr12:6609552..6609576 (25 bp)
TGTGCTCCGATTGGATGTCGACGGC
LOC_Os12g12070
OsAffx.19621.1.S1_at--513--2192Chr12:6609520..6609544 (25 bp)
ACACACGTCGGCTGCCAGGGAGTTG
LOC_Os12g12070
OsAffx.19621.1.S1_at--1035--7591Chr12:6609439..6609463 (25 bp)
GGGCAGCAGCGACGGTTTCTTAGAG
LOC_Os12g12070
OsAffx.19621.1.S1_at--409--1472Chr12:6609369..6609393 (25 bp)
AGAAGGACGAACACGGCACGGTGTC
LOC_Os12g12070
Target Sequence 
GGCAGCCTCGCCGAATACTTATAGGTGGCAAAAGGCGGTGGCGCAAGGCGGTTCCAGAGGGGAAGATCAAGGAGAACTTC
GTGACGGCGCCGTGGAAAAGAAAATGACGGCGTCGGCTCTGTGCTCCGATTGGATGTCGACGGCGGCGCGCACACACGTC
GGCTGCCAGGGAGTTGGGCGGCTGGGAAGGGAGGACACGGCACGGCGTCGGCGCGACTTGGCGGCGAAGGAAGGGCAGCA
GCGACGGTTTCTTAGAGAAGGAGAAAACGGCGGAGGAGGAGGGCAAGGCACGGCAGCGGCGGAGAAGGACGAACACGGCA
CGGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis