Browse Element(s) Details


OsAffx.5396.1.A1_at

Description tigr:9635.m02084
TID=OsAffx.5396.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2212911/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22090NANA7+12341959..12345902retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22100NANA7+12349684..12350885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22110OsAffx.28535.1.S1_at11/117+12355421..12357954hypothetical protein
LOC_Os07g22120OsAffx.16356.1.S1_at11/117+12361674..12363291hypothetical protein
LOC_Os07g22129OsAffx.5396.1.A1_at11/117+12367506..12367985retrotransposon protein, putative, unclassified
LOC_Os07g22140OsAffx.15708.1.S1_at1/117+12370773..12371977retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22150OsAffx.5397.1.S1_at11/117+12373289..12373525hypothetical protein
LOC_Os07g22160OsAffx.9790.1.S1_x_at1/117+12376363..12376884retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22170NANA7+12378313..12381509hypothetical protein
LOC_Os07g22180NANA7+12381940..12383436retrotransposon protein, putative, unclassified
LOC_Os07g22190NANA7+12385649..12387753retrotransposon, putative, centromere-specific
LOC_Os07g22200OsAffx.22699.1.S1_x_at1/117+12387952..12393273retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5396.1.A1_at--252--5271Chr07:12367856..12367880 (25 bp)
GAATGTCCTTGACGAGAAATTGGAA
LOC_Os07g22129
OsAffx.5396.1.A1_at--205--5611Chr07:12367871..12367895 (25 bp)
GAAATTGGAAAATCTGGCTCTGTGC
LOC_Os07g22129
OsAffx.5396.1.A1_at--847--3171Chr07:12367873..12367897 (25 bp)
AATTGGAAAATCTGGCTCTGTGCCT
LOC_Os07g22129
OsAffx.5396.1.A1_at--377--31Chr07:12367874..12367898 (25 bp)
ATTGGAAAATCTGGCTCTGTGCCTT
LOC_Os07g22129
OsAffx.5396.1.A1_at--920--8311Chr07:12367886..12367910 (25 bp)
GGCTCTGTGCCTTTCACTTCTCTTG
LOC_Os07g22129
OsAffx.5396.1.A1_at--864--10331Chr07:12367897..12367921 (25 bp)
TTTCACTTCTCTTGGCTTTCCAAAG
LOC_Os07g22129
OsAffx.5396.1.A1_at--1065--10511Chr07:12367898..12367922 (25 bp)
TTCACTTCTCTTGGCTTTCCAAAGG
LOC_Os07g22129
OsAffx.5396.1.A1_at--1112--3291Chr07:12367900..12367924 (25 bp)
CACTTCTCTTGGCTTTCCAAAGGGT
LOC_Os07g22129
OsAffx.5396.1.A1_at--1059--9251Chr07:12367904..12367928 (25 bp)
TCTCTTGGCTTTCCAAAGGGTTCCA
LOC_Os07g22129
OsAffx.5396.1.A1_at--338--9251Chr07:12367906..12367930 (25 bp)
TCTTGGCTTTCCAAAGGGTTCCACA
LOC_Os07g22129
OsAffx.5396.1.A1_at--1023--10811Chr07:12367908..12367932 (25 bp)
TTGGCTTTCCAAAGGGTTCCACAAG
LOC_Os07g22129
Target Sequence 
GAATGTCCTTGACGAGAAATTGGAAAATCTGGCTCTGTGCCTTTCACTTCTCTTGGCTTTCCAAAGGGTTCCACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5396.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis