Browse Element(s) Details


OsAffx.5397.1.S1_at

Description tigr:9635.m02086
TID=OsAffx.5397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2215011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22100NANA7+12349684..12350885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22110OsAffx.28535.1.S1_at11/117+12355421..12357954hypothetical protein
LOC_Os07g22120OsAffx.16356.1.S1_at11/117+12361674..12363291hypothetical protein
LOC_Os07g22129OsAffx.5396.1.A1_at11/117+12367506..12367985retrotransposon protein, putative, unclassified
LOC_Os07g22140OsAffx.15708.1.S1_at1/117+12370773..12371977retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22150OsAffx.5397.1.S1_at11/117+12373289..12373525hypothetical protein
LOC_Os07g22160OsAffx.9790.1.S1_x_at1/117+12376363..12376884retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22170NANA7+12378313..12381509hypothetical protein
LOC_Os07g22180NANA7+12381940..12383436retrotransposon protein, putative, unclassified
LOC_Os07g22190NANA7+12385649..12387753retrotransposon, putative, centromere-specific
LOC_Os07g22200OsAffx.22699.1.S1_x_at1/117+12387952..12393273retrotransposon protein, putative, unclassified
LOC_Os07g22210NANA7+12395665..12396156retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5397.1.S1_at--998--3411Chr07:12373392..12373416 (25 bp)
CAGAGAAATTCACACTTGAGATGAA
LOC_Os07g22150
OsAffx.5397.1.S1_at--911--5591Chr07:12373388..12373412 (25 bp)
GAAATTCACACTTGAGATGAAGCAG
LOC_Os07g22150
OsAffx.5397.1.S1_at--232--6911Chr07:12373328..12373352 (25 bp)
GTATCTGAGCTCGTTTGGACATTTC
LOC_Os07g22150
OsAffx.5397.1.S1_at--73--10171Chr07:12373327..12373351 (25 bp)
TATCTGAGCTCGTTTGGACATTTCC
LOC_Os07g22150
OsAffx.5397.1.S1_at--923--471Chr07:12373326..12373350 (25 bp)
ATCTGAGCTCGTTTGGACATTTCCC
LOC_Os07g22150
OsAffx.5397.1.S1_at--690--9471Chr07:12373325..12373349 (25 bp)
TCTGAGCTCGTTTGGACATTTCCCA
LOC_Os07g22150
OsAffx.5397.1.S1_at--1071--3851Chr07:12373324..12373348 (25 bp)
CTGAGCTCGTTTGGACATTTCCCAA
LOC_Os07g22150
OsAffx.5397.1.S1_at--557--8911Chr07:12373323..12373347 (25 bp)
TGAGCTCGTTTGGACATTTCCCAAT
LOC_Os07g22150
OsAffx.5397.1.S1_at--165--5911Chr07:12373322..12373346 (25 bp)
GAGCTCGTTTGGACATTTCCCAATG
LOC_Os07g22150
OsAffx.5397.1.S1_at--489--1251Chr07:12373321..12373345 (25 bp)
AGCTCGTTTGGACATTTCCCAATGT
LOC_Os07g22150
OsAffx.5397.1.S1_at--41--3791Chr07:12373319..12373343 (25 bp)
CTCGTTTGGACATTTCCCAATGTCG
LOC_Os07g22150
Target Sequence 
CAGAGAAATTCACACTTGAGATGAAGCAGGAGTTTGAAGCAATGATGCAGCAAGCACGGGATCAGTATCTGAGCTCGTTT
GGACATTTCCCAATGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis